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Moc04g24740 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g24740
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:17915392..17916636
RNA-Seq ExpressionMoc04g24740
SyntenyMoc04g24740
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY92947.1 hypothetical protein Acr_08g0013430 [Actinidia rufa]1.5e-3343.69Show/hide
Query:  SWMDPIADFIR-GNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG--LVEHY---------EP----------------------TTN
        +W+D I D++R G  P+D  + R+L  R+ARF + +  LY+R FS PLLRCL PEE   + E Y         EP                        N
Subjt:  SWMDPIADFIR-GNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG--LVEHY---------EP----------------------TTN

Query:  EDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAE
        E EL LNLDLL+E+R  A+LR   Y+GR+A++YN RV  R+F  G LV RRV         G L P WEGP+++  + RPGT  L DL G  L+HPWNAE
Subjt:  EDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAE

Query:  HLKRYY
        HLK+YY
Subjt:  HLKRYY

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]5.7e-3369Show/hide
Query:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP
        VE+YE   NE+ELLL LDL++E+R  AQLRL EYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFE+KGIVRPGTY+LADL+G +L+HP
Subjt:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]1.6e-0651.85Show/hide
Query:  MDPIADFIRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG
        MDPI DF+ G    D KE +++AR+ AR+++R+  LYR GFSLPLL+C+  E+G
Subjt:  MDPIADFIRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]1.7e-3235.43Show/hide
Query:  MDIGAPESSWMDPIADF-IRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPE-----------------------EGL-----------
        M +   + +WMD I +F + G+ P DP + RKL  ++A ++++++ L++RG+SLPLLRCL PE                        GL           
Subjt:  MDIGAPESSWMDPIADF-IRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPE-----------------------EGL-----------

Query:  --------------------------------------------VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHL
                                                    VE++   TN + LL+NLDLL E+R+ +QLRL EY  RMA +YNARV+ R F+ G L
Subjt:  --------------------------------------------VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHL

Query:  VLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAEHLKRYY
        VL++V  HV AL P WEGP+ +  I+RP  YL   L G  L HPWNAEHL+ YY
Subjt:  VLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAEHLKRYY

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]1.6e-4072.97Show/hide
Query:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP
        +E YEP  NE ELLLNLDLLE +R  AQLRL+E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL+  VLAHP
Subjt:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP

Query:  WNAEHLKRYYP
        WNAEHLKRYYP
Subjt:  WNAEHLKRYYP

XP_023876159.1 uncharacterized protein LOC111988600 [Quercus suber]3.4e-3041.94Show/hide
Query:  ESSWMDPIADFIR-GNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG---LVEHYEPTTNE--------DELLLNLDLLEERRAMAQL
        E +WM PI  +++ G  P+   E RKL  R+AR+++ DE LY+RGFS P LRCL P+E    L E +E              ++ LNLDL++E R  A+ 
Subjt:  ESSWMDPIADFIR-GNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG---LVEHYEPTTNE--------DELLLNLDLLEERRAMAQL

Query:  RLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHV-----GALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAEHLKRYY
        R+  Y+  MAR ++A V+PR F +G LVL++V           L P WEGP+ +    RPG+Y L  L    L HPWN EHL+RYY
Subjt:  RLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHV-----GALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAEHLKRYY

TrEMBL top hitse value%identityAlignment
A0A6J1DP99 uncharacterized protein K02A2.6-like2.8e-3369Show/hide
Query:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP
        VE+YE   NE+ELLL LDL++E+R  AQLRL EYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFE+KGIVRPGTY+LADL+G +L+HP
Subjt:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP

A0A6J1DP99 uncharacterized protein K02A2.6-like7.5e-0751.85Show/hide
Query:  MDPIADFIRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG
        MDPI DF+ G    D KE +++AR+ AR+++R+  LYR GFSLPLL+C+  E+G
Subjt:  MDPIADFIRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG

A0A6J1DP99 uncharacterized protein K02A2.6-like8.0e-3335.43Show/hide
Query:  MDIGAPESSWMDPIADF-IRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPE-----------------------EGL-----------
        M +   + +WMD I +F + G+ P DP + RKL  ++A ++++++ L++RG+SLPLLRCL PE                        GL           
Subjt:  MDIGAPESSWMDPIADF-IRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPE-----------------------EGL-----------

Query:  --------------------------------------------VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHL
                                                    VE++   TN + LL+NLDLL E+R+ +QLRL EY  RMA +YNARV+ R F+ G L
Subjt:  --------------------------------------------VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHL

Query:  VLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAEHLKRYY
        VL++V  HV AL P WEGP+ +  I+RP  YL   L G  L HPWNAEHL+ YY
Subjt:  VLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAEHLKRYY

A0A6J1DWM2 Ribonuclease H2.8e-3059.09Show/hide
Query:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP
        VE+++   N + LL+NLDLLEE+R+ +QLRL EYQ RMAR+YNARV+ R F+   LVL++V  HVGAL+P WEGP+ +  I+RP  YLL+DL G  L HP
Subjt:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP

Query:  WNAEHLKRYY
        WNAEHL+ YY
Subjt:  WNAEHLKRYY

A0A6J1DWM2 Ribonuclease H3.3e-1051.56Show/hide
Query:  MDIGAPESSWMDPIADF-IRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEE
        M+I + + +WMDPI DF + G+ P DP + RKL R+AA +++++  L++RG+SLPLLRCL PEE
Subjt:  MDIGAPESSWMDPIADF-IRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEE

A0A6J1DXL9 uncharacterized protein LOC1110254488.0e-4172.97Show/hide
Query:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP
        +E YEP  NE ELLLNLDLLE +R  AQLRL+E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL+  VLAHP
Subjt:  VEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHP

Query:  WNAEHLKRYYP
        WNAEHLKRYYP
Subjt:  WNAEHLKRYYP

A0A7J0F4U0 Uncharacterized protein7.2e-3443.69Show/hide
Query:  SWMDPIADFIR-GNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG--LVEHY---------EP----------------------TTN
        +W+D I D++R G  P+D  + R+L  R+ARF + +  LY+R FS PLLRCL PEE   + E Y         EP                        N
Subjt:  SWMDPIADFIR-GNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEG--LVEHY---------EP----------------------TTN

Query:  EDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAE
        E EL LNLDLL+E+R  A+LR   Y+GR+A++YN RV  R+F  G LV RRV         G L P WEGP+++  + RPGT  L DL G  L+HPWNAE
Subjt:  EDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAE

Query:  HLKRYY
        HLK+YY
Subjt:  HLKRYY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCTAAGGAGCGCCGAAAGTTGGCAAGGCGGGCAGC
TCGGTTCGTGGTCCGAGATGAGGCATTGTACCGACGTGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCCGAAGAGGGCCTAGTAGAGCATTACGAGCCTACGACAA
ATGAGGATGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCGATGGCCCAGCTACGCCTGATGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGC
GTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCATTTGAGATCAAGGGGATAGT
CCGACCTGGGACGTACTTATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCTAAGGAGCGCCGAAAGTTGGCAAGGCGGGCAGC
TCGGTTCGTGGTCCGAGATGAGGCATTGTACCGACGTGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCCGAAGAGGGCCTAGTAGAGCATTACGAGCCTACGACAA
ATGAGGATGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCGATGGCCCAGCTACGCCTGATGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGC
GTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCATTTGAGATCAAGGGGATAGT
CCGACCTGGGACGTACTTATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MDIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDEALYRRGFSLPLLRCLTPEEGLVEHYEPTTNEDELLLNLDLLEERRAMAQLRLMEYQGRMARHYNAR
VRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYLLADLKGDVLAHPWNAEHLKRYYP