CuGenDBv2

Gene ID	Moc04g24910
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Genome location	chr4:18046521..18046982
RNA-Seq Expression	Moc04g24910
Synteny	Moc04g24910
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006413 - translational initiation (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003743 - translation initiation factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR021109 - Aspartic peptidase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]

3.4e-58

73.86

Show/hide

Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDFV+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQT ++QP G+KMISA+QLKKGL+RDEPTFMAIP+    NS E VP+EI RVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

3.4e-58

73.86

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Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDFV+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQT ++QP G+KMISA+QLKKGL+RDEPTFMAIP+    NS E VP+EI RVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

3.4e-58

73.86

Show/hide

Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDFV+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQT ++QP G+KMISA+QLKKGL+RDEPTFMAIP+    NS E VP+EI RVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

3.4e-58

73.86

Show/hide

Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDFV+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQT ++QP G+KMISA+QLKKGL+RDEPTFMAIP+    NS E VP+EI RVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]

1.9e-69

90.85

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Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNFM ETEARRLNL WDKDPGKMKAVNSAALPIMGVAKR SVKLGTWSGLVDFV+VRMDDFD+VLG++FLLEHKVI MPLAKCLVVT SDP V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQTSIKQPSGVKMISALQLKKG+A+DEPTFMAIPVAE RNSEE VPREIQRVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0E2 Reverse transcriptase

1.6e-58

73.86

Show/hide

Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDFV+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQT ++QP G+KMISA+QLKKGL+RDEPTFMAIP+    NS E VP+EI RVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

A0A5D3B7E7 Reverse transcriptase

1.6e-58

73.86

Show/hide

Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDFV+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQT ++QP G+KMISA+QLKKGL+RDEPTFMAIP+    NS E VP+EI RVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

A0A5D3BRZ6 Reverse transcriptase

1.6e-58

73.86

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Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDFV+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQT ++QP G+KMISA+QLKKGL+RDEPTFMAIP+    NS E VP+EI RVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

A0A5D3C4R1 Reverse transcriptase

1.6e-58

73.86

Show/hide

Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDFV+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQT ++QP G+KMISA+QLKKGL+RDEPTFMAIP+    NS E VP+EI RVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

A0A6J1DLQ6 uncharacterized protein LOC111022320

9.3e-70

90.85

Show/hide

Query:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV
        MVDSGATHNFM ETEARRLNL WDKDPGKMKAVNSAALPIMGVAKR SVKLGTWSGLVDFV+VRMDDFD+VLG++FLLEHKVI MPLAKCLVVT SDP V
Subjt:  MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTV

Query:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL
        VQTSIKQPSGVKMISALQLKKG+A+DEPTFMAIPVAE RNSEE VPREIQRVL
Subjt:  VQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTAGATTCTGGTGCCACCCACAATTTCATGATAGAAACCGAAGCACGTCGGCTGAACTTGCGATGGGATAAAGACCCAGGGAAGATGAAAGCGGTCAACTCGGCTGC
TCTCCCCATCATGGGAGTTGCAAAAAGAGCCTCAGTAAAGCTAGGGACATGGAGTGGACTGGTCGACTTTGTGATGGTGCGGATGGACGACTTCGACATAGTATTGGGGA
TGGAATTCCTGCTGGAACACAAAGTCATCCTCATGCCCCTTGCTAAGTGCCTGGTTGTAACGGGTTCCGATCCCACAGTTGTTCAGACAAGCATCAAACAACCAAGCGGA
GTGAAGATGATATCAGCACTACAGCTAAAGAAAGGTCTCGCCCGTGACGAGCCGACCTTCATGGCCATTCCTGTTGCGGAAGACAGAAATTCTGAAGAGCCAGTTCCCAG
AGAAATCCAGCGAGTCTTGTAG

mRNA sequence

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Protein sequence

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MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSG
VKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

Moc04g24910 (gene) of Bitter gourd (OHB3-1) v2 genome