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Moc04g25510 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g25510
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionextensin-like
Genome locationchr4:18531295..18535879
RNA-Seq ExpressionMoc04g25510
SyntenyMoc04g25510
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFA40924.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]1.8e-0435.29Show/hide
Query:  ELRLLKSSIKEPSVLELKALSQHLKFAYLGSSKHET-----EIRGTFPNKQLLAIKVLNEEEEPWFADLATY-----VVSGNLIRQVGALGRD-KHAGVY
        E +  KSS+ EP V+ELKAL  HL++A+L  + H+      EI  +FP + L  +    +   PWFAD   Y     +V G   +Q   + +D KH   Y
Subjt:  ELRLLKSSIKEPSVLELKALSQHLKFAYLGSSKHET-----EIRGTFPNKQLLAIKVLNEEEEPWFADLATY-----VVSGNLIRQVGALGRD-KHAGVY

Query:  SW
         W
Subjt:  SW
XP_022154805.1 extensin-like [Momordica charantia]5.6e-0637.96Show/hide
Query:  SKKERALKLELSASSGSSGEFKEPVETIPPLEVSDKRSLAQKTPTSLKHAPADAKLLSSPPPVLNPRVPP------TPGSTKHINV-----VPAGQAAFQ
        + ++R LKLELSASSGS+G+FKE  ETIP        ++ +++PTS +H P +A++L  PPPV +P+         +P  TK I        P  +A   
Subjt:  SKKERALKLELSASSGSSGEFKEPVETIPPLEVSDKRSLAQKTPTSLKHAPADAKLLSSPPPVLNPRVPP------TPGSTKHINV-----VPAGQAAFQ

Query:  KFVDPEVR
        KF     R
Subjt:  KFVDPEVR
XP_022159162.1 uncharacterized protein LOC111025586 [Momordica charantia]6.0e-0869.77Show/hide
Query:  SSKHETEIRGTFPNKQLLAIKVLNEEEEPWFADLATYVVSGNL
        S+KHETEIRGTFP++Q+L ++ L EEEEPWFADLA Y+ SG L
Subjt:  SSKHETEIRGTFPNKQLLAIKVLNEEEEPWFADLATYVVSGNL
TrEMBL top hitse value%identityAlignment
A0A1S3YNG2 uncharacterized protein LOC1077778835.7e-0440Show/hide
Query:  YESLDLTNPELRLLKSSIKEPSVLELKALSQHLKFAYLGSSKHETEIRGTFPNKQLLAIKVLNEEEEPWFADLATYVVSG
        +E L L   +    + SIKEP  LELK L  HL+           EI  TFP++QLLA  +   +  PW+AD+A Y+ SG
Subjt:  YESLDLTNPELRLLKSSIKEPSVLELKALSQHLKFAYLGSSKHETEIRGTFPNKQLLAIKVLNEEEEPWFADLATYVVSG
A0A6J1DKP0 extensin-like2.7e-0637.96Show/hide
Query:  SKKERALKLELSASSGSSGEFKEPVETIPPLEVSDKRSLAQKTPTSLKHAPADAKLLSSPPPVLNPRVPP------TPGSTKHINV-----VPAGQAAFQ
        + ++R LKLELSASSGS+G+FKE  ETIP        ++ +++PTS +H P +A++L  PPPV +P+         +P  TK I        P  +A   
Subjt:  SKKERALKLELSASSGSSGEFKEPVETIPPLEVSDKRSLAQKTPTSLKHAPADAKLLSSPPPVLNPRVPP------TPGSTKHINV-----VPAGQAAFQ

Query:  KFVDPEVR
        KF     R
Subjt:  KFVDPEVR
A0A6J1DZ22 uncharacterized protein LOC1110255862.9e-0869.77Show/hide
Query:  SSKHETEIRGTFPNKQLLAIKVLNEEEEPWFADLATYVVSGNL
        S+KHETEIRGTFP++Q+L ++ L EEEEPWFADLA Y+ SG L
Subjt:  SSKHETEIRGTFPNKQLLAIKVLNEEEEPWFADLATYVVSGNL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAGTCCTTAGATCTCACAAACCCTGAGCTTAGATTATTGAAGTCATCTATTAAAGAGCCTTCAGTGTTGGAGCTTAAAGCATTGTCGCAGCATCTGAAATTTGC
TTACCTAGGAAGCTCCAAGCATGAGACAGAAATTAGAGGAACCTTTCCAAACAAGCAACTGTTGGCAATTAAAGTCCTGAATGAAGAGGAGGAACCATGGTTCGCAGATC
TAGCCACCTATGTCGTCAGTGGAAATCTGATAAGGCAGGTGGGAGCGTTGGGACGAGACAAACATGCAGGTGTGTATTCATGGCAAATTCGGCTCTCAAAGAAAGAGAGG
GCGTTGAAGCTGGAGCTCTCCGCCAGTTCAGGGTCCAGCGGCGAGTTCAAGGAGCCCGTCGAGACGATTCCACCGTTGGAGGTCTCTGATAAGCGAAGTCTTGCTCAGAA
AACCCCAACGAGTTTGAAGCACGCTCCGGCTGATGCAAAGCTTCTGTCATCTCCTCCGCCTGTCCTTAACCCTCGGGTACCGCCGACCCCGGGCTCCACAAAGCACATCA
ACGTTGTTCCTGCAGGCCAAGCTGCCTTTCAGAAATTTGTGGACCCGGAGGTGAGGGCCAACTATAGGGGGATTAAGACCAGGGACTTCTATTTCGAGAAAGGGTTTTTA
GCCATGGAGATGCCTAGGTTTGTGAGGGATGAAGCTGTGCGGATGAAGTGGGAGCATATGCCGGTTTTGCCAGAGCTGGTGAGGGAATTCTACGTGAATTTTGACCCTGA
CAGGGTGGGCTGCACAACGGTGAGGGAGGTGGAGTTAGACTGGACGCCGGAGCGGATTAACAAACTCCTTAAGTTGCCAAGCATTCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTATGAGTCCTTAGATCTCACAAACCCTGAGCTTAGATTATTGAAGTCATCTATTAAAGAGCCTTCAGTGTTGGAGCTTAAAGCATTGTCGCAGCATCTGAAATTTGC
TTACCTAGGAAGCTCCAAGCATGAGACAGAAATTAGAGGAACCTTTCCAAACAAGCAACTGTTGGCAATTAAAGTCCTGAATGAAGAGGAGGAACCATGGTTCGCAGATC
TAGCCACCTATGTCGTCAGTGGAAATCTGATAAGGCAGGTGGGAGCGTTGGGACGAGACAAACATGCAGGTGTGTATTCATGGCAAATTCGGCTCTCAAAGAAAGAGAGG
GCGTTGAAGCTGGAGCTCTCCGCCAGTTCAGGGTCCAGCGGCGAGTTCAAGGAGCCCGTCGAGACGATTCCACCGTTGGAGGTCTCTGATAAGCGAAGTCTTGCTCAGAA
AACCCCAACGAGTTTGAAGCACGCTCCGGCTGATGCAAAGCTTCTGTCATCTCCTCCGCCTGTCCTTAACCCTCGGGTACCGCCGACCCCGGGCTCCACAAAGCACATCA
ACGTTGTTCCTGCAGGCCAAGCTGCCTTTCAGAAATTTGTGGACCCGGAGGTGAGGGCCAACTATAGGGGGATTAAGACCAGGGACTTCTATTTCGAGAAAGGGTTTTTA
GCCATGGAGATGCCTAGGTTTGTGAGGGATGAAGCTGTGCGGATGAAGTGGGAGCATATGCCGGTTTTGCCAGAGCTGGTGAGGGAATTCTACGTGAATTTTGACCCTGA
CAGGGTGGGCTGCACAACGGTGAGGGAGGTGGAGTTAGACTGGACGCCGGAGCGGATTAACAAACTCCTTAAGTTGCCAAGCATTCGATAG
Protein sequenceShow/hide protein sequence
MYESLDLTNPELRLLKSSIKEPSVLELKALSQHLKFAYLGSSKHETEIRGTFPNKQLLAIKVLNEEEEPWFADLATYVVSGNLIRQVGALGRDKHAGVYSWQIRLSKKER
ALKLELSASSGSSGEFKEPVETIPPLEVSDKRSLAQKTPTSLKHAPADAKLLSSPPPVLNPRVPPTPGSTKHINVVPAGQAAFQKFVDPEVRANYRGIKTRDFYFEKGFL
AMEMPRFVRDEAVRMKWEHMPVLPELVREFYVNFDPDRVGCTTVREVELDWTPERINKLLKLPSIR