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Moc04g25780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g25780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr4:18693321..18698427
RNA-Seq ExpressionMoc04g25780
SyntenyMoc04g25780
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO57964.1 reverse transcriptase [Corchorus capsularis]3.5e-1238.81Show/hide
Query:  SHHSQIWNPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIRLIKNKIHTL
        SH  Q W PPS G  KLN+DAA+  R   +GLG ++R S G V+      V + L  L AE+  IL G   A+T     +  ESDSL AI  +     +L
Subjt:  SHHSQIWNPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIRLIKNKIHTL

Query:  GDELNWVWEARALASSFDSIFFGHVSRHCTKPAH
         +  + + + + L S FDS  F HV R   K AH
Subjt:  GDELNWVWEARALASSFDSIFFGHVSRHCTKPAH

OMO91484.1 reverse transcriptase [Corchorus capsularis]1.7e-1135.57Show/hide
Query:  SASRQHASNSHHSQIWNPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIR
        S+  Q  S S      +PP  G +K+N DA F  ++  +GLG ++RG +G VMV+ S  + +   PL AE+  +L  F+ A     T   +ESD L+AI+
Subjt:  SASRQHASNSHHSQIWNPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIR

Query:  LIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAHLFGTKR
         IK+      D  N ++E R LA  FD   F HV+R     AH     R
Subjt:  LIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAHLFGTKR

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]8.5e-1942.75Show/hide
Query:  LGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCT
        + +Y Q+Y QA+     S Q +S    S  W PP    +K+N+DAA R +S+GLG ++R   G ++VAKS+++P  L PL AEI+GILE  K A +   T
Subjt:  LGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCT

Query:  RLKVESDSLLAIRLIKNKIHTLGDELNWVWE
        RL VESD   AIRL++  + ++G+EL  +W+
Subjt:  RLKVESDSLLAIRLIKNKIHTLGDELNWVWE

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.0e-2947.44Show/hide
Query:  LGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCT
        L  +L  + QA+ ++ + R  +++    Q W P S+  LKLNTDAA R +S+  G ++R S  +++ A S+ VP+ L PLLAEI+ ILEG K+A     T
Subjt:  LGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCT

Query:  RLKVESDSLLAIRLIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAH
         L+VESDSLLAI+LI+N+IHT GDE NWV E +AL   F  I F H SR C + AH
Subjt:  RLKVESDSLLAIRLIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAH

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.4e-1339.31Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIRLIKNKIHTLGDELNWVW
        W PP  G +K+NTDAA  +  SG+G LLR    A +V   V       PLLA+I  I EG   A  +   R+ VE+DSL A+ LI +K    G+ ++WV 
Subjt:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIRLIKNKIHTLGDELNWVW

Query:  EARALASSFDSIFFGHVSRHCTKPAHLFGTKR-----GFAYRLIF
        + RA A  F  I F HV R     A+  G +      GF +RL F
Subjt:  EARALASSFDSIFFGHVSRHCTKPAHLFGTKR-----GFAYRLIF

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase2.7e-1038.28Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSS--SGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIRLIKNKIHTLGDELNW
        W  PS G  K+NTDA+F  S+  +GLG ++R  +G ++V+ +  + +    L AE+  IL GF+ A     TR  +ESDSLLAI  I  K   L +    
Subjt:  WNPPSTGYLKLNTDAAFRDSS--SGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIRLIKNKIHTLGDELNW

Query:  VWEARALASSFDSIFFGHVSRHCTKPAH
        + E R +AS FD   F  V+R     AH
Subjt:  VWEARALASSFDSIFFGHVSRHCTKPAH

A0A1R3J9H7 Reverse transcriptase8.4e-1235.57Show/hide
Query:  SASRQHASNSHHSQIWNPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIR
        S+  Q  S S      +PP  G +K+N DA F  ++  +GLG ++RG +G VMV+ S  + +   PL AE+  +L  F+ A     T   +ESD L+AI+
Subjt:  SASRQHASNSHHSQIWNPPSTGYLKLNTDAAF--RDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIR

Query:  LIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAHLFGTKR
         IK+      D  N ++E R LA  FD   F HV+R     AH     R
Subjt:  LIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAHLFGTKR

A0A6J1BQ49 uncharacterized protein LOC1110047864.1e-1942.75Show/hide
Query:  LGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCT
        + +Y Q+Y QA+     S Q +S    S  W PP    +K+N+DAA R +S+GLG ++R   G ++VAKS+++P  L PL AEI+GILE  K A +   T
Subjt:  LGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCT

Query:  RLKVESDSLLAIRLIKNKIHTLGDELNWVWE
        RL VESD   AIRL++  + ++G+EL  +W+
Subjt:  RLKVESDSLLAIRLIKNKIHTLGDELNWVWE

A0A6J1DX30 uncharacterized protein LOC1110248743.4e-2947.44Show/hide
Query:  LGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCT
        L  +L  + QA+ ++ + R  +++    Q W P S+  LKLNTDAA R +S+  G ++R S  +++ A S+ VP+ L PLLAEI+ ILEG K+A     T
Subjt:  LGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCT

Query:  RLKVESDSLLAIRLIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAH
         L+VESDSLLAI+LI+N+IHT GDE NWV E +AL   F  I F H SR C + AH
Subjt:  RLKVESDSLLAIRLIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAH

A0A6J1DZK3 uncharacterized protein LOC1110249686.8e-1439.31Show/hide
Query:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIRLIKNKIHTLGDELNWVW
        W PP  G +K+NTDAA  +  SG+G LLR    A +V   V       PLLA+I  I EG   A  +   R+ VE+DSL A+ LI +K    G+ ++WV 
Subjt:  WNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQTIYCTRLKVESDSLLAIRLIKNKIHTLGDELNWVW

Query:  EARALASSFDSIFFGHVSRHCTKPAHLFGTKR-----GFAYRLIF
        + RA A  F  I F HV R     A+  G +      GF +RL F
Subjt:  EARALASSFDSIFFGHVSRHCTKPAHLFGTKR-----GFAYRLIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAACAGTGTATTTCAGATTGCAGCTCGAACTCGGCCTCCGGACCGATCTGAATACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCGACGATCAAGTCAGTAT
AGGTCGGATTCCCAGTTTAGTTCGAGGTCAGAAATCATCGTACCTGATCGTCGGACCTCGGCCAGGTTCACCTCGGCCCTCATACTTAGTATCTGTCAACGCTAGTGGTG
GTGATCTCGGCGGTCCGAGCTGGGGCATGACTCATGGTCACCTTGGGGCACCAATGGCTGTCCTCCACGTGTCCAGGAGGTACGGGGAAGTGAAAGAGGAAGGGATGGGG
TCAACATTGTCATCAAAGCCCCAGCCGAAGAAGTATAGACCTAAGCTTGGGGCTTATCTTCAAGATTATTTGCAAGCACGGACTACCTCTTCAGCATCGAGGCAACATGC
CAGTAATTCTCACCATAGTCAGATTTGGAACCCTCCAAGTACAGGCTATCTGAAGCTTAACACTGACGCTGCATTTAGGGATTCATCTTCGGGCTTGGGGTTTCTTTTAC
GGGGTTCTGATGGAGCTGTGATGGTGGCCAAATCCGTGTATGTTCCTTATTCATTACCTCCTCTTCTGGCTGAAATTAAAGGGATTCTTGAAGGATTTAAGTATGCCCAA
ACTATTTATTGTACCCGGCTTAAAGTGGAATCAGACTCCCTCTTGGCAATCCGATTGATTAAGAATAAAATCCACACCCTTGGAGATGAGCTTAATTGGGTGTGGGAAGC
AAGAGCGCTTGCTTCCTCTTTCGATTCCATCTTTTTCGGGCATGTCTCTCGGCACTGCACCAAACCTGCTCATCTTTTTGGCACAAAGAGGGGTTTTGCTTACCGCCTCA
TCTTTTTGGTTGTTAAACTACCCATCATGGCTTTTAGACTCTGTAATGGAAGATTCTCCATCAAACTATGCCAAAGTGGCTTAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACAACAGTGTATTTCAGATTGCAGCTCGAACTCGGCCTCCGGACCGATCTGAATACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCGACGATCAAGTCAGTAT
AGGTCGGATTCCCAGTTTAGTTCGAGGTCAGAAATCATCGTACCTGATCGTCGGACCTCGGCCAGGTTCACCTCGGCCCTCATACTTAGTATCTGTCAACGCTAGTGGTG
GTGATCTCGGCGGTCCGAGCTGGGGCATGACTCATGGTCACCTTGGGGCACCAATGGCTGTCCTCCACGTGTCCAGGAGGTACGGGGAAGTGAAAGAGGAAGGGATGGGG
TCAACATTGTCATCAAAGCCCCAGCCGAAGAAGTATAGACCTAAGCTTGGGGCTTATCTTCAAGATTATTTGCAAGCACGGACTACCTCTTCAGCATCGAGGCAACATGC
CAGTAATTCTCACCATAGTCAGATTTGGAACCCTCCAAGTACAGGCTATCTGAAGCTTAACACTGACGCTGCATTTAGGGATTCATCTTCGGGCTTGGGGTTTCTTTTAC
GGGGTTCTGATGGAGCTGTGATGGTGGCCAAATCCGTGTATGTTCCTTATTCATTACCTCCTCTTCTGGCTGAAATTAAAGGGATTCTTGAAGGATTTAAGTATGCCCAA
ACTATTTATTGTACCCGGCTTAAAGTGGAATCAGACTCCCTCTTGGCAATCCGATTGATTAAGAATAAAATCCACACCCTTGGAGATGAGCTTAATTGGGTGTGGGAAGC
AAGAGCGCTTGCTTCCTCTTTCGATTCCATCTTTTTCGGGCATGTCTCTCGGCACTGCACCAAACCTGCTCATCTTTTTGGCACAAAGAGGGGTTTTGCTTACCGCCTCA
TCTTTTTGGTTGTTAAACTACCCATCATGGCTTTTAGACTCTGTAATGGAAGATTCTCCATCAAACTATGCCAAAGTGGCTTAATTTAA
Protein sequenceShow/hide protein sequence
MHNSVFQIAARTRPPDRSEYLGGPAQKGEHSDDQVSIGRIPSLVRGQKSSYLIVGPRPGSPRPSYLVSVNASGGDLGGPSWGMTHGHLGAPMAVLHVSRRYGEVKEEGMG
STLSSKPQPKKYRPKLGAYLQDYLQARTTSSASRQHASNSHHSQIWNPPSTGYLKLNTDAAFRDSSSGLGFLLRGSDGAVMVAKSVYVPYSLPPLLAEIKGILEGFKYAQ
TIYCTRLKVESDSLLAIRLIKNKIHTLGDELNWVWEARALASSFDSIFFGHVSRHCTKPAHLFGTKRGFAYRLIFLVVKLPIMAFRLCNGRFSIKLCQSGLI