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Moc04g26220 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g26220
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:19065020..19069476
RNA-Seq ExpressionMoc04g26220
SyntenyMoc04g26220
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143486.1 uncharacterized protein LOC111013362 [Momordica charantia]1.4e-4093.48Show/hide
Query:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL
        +SAYETDLARSVPVEILDNPSI EPDL+EIGAPESSWMDPI DFIRGNSPQDPKERRKL RRAARFVVRDGALYRRGFSLPLL+CLTPEEGL
Subjt:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]2.6e-4235.26Show/hide
Query:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGLV-------
        +SAYETDLARSV V ILDNPSILEPDL+E+  PE SWMDPI +FI+ N PQD K  +K+ R+ ARF++RDGALYRRGFSLPLLKC+TPE+G         
Subjt:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGLV-------

Query:  -------------------EHYEPTTNED-----------------------------------------------------------------------
                            +Y P  ++D                                                                       
Subjt:  -------------------EHYEPTTNED-----------------------------------------------------------------------

Query:  ----------------------------------GLLLNLDLLEERRAMAQLR-LAEYQGRMTRHYNARVRPRAF--------QVG---HLVLRRVQTHV
                                          GL + LD  + R A      L  Y+  +    +  +   AF        ++G   + V +++Q+HV
Subjt:  ----------------------------------GLLLNLDLLEERRAMAQLR-LAEYQGRMTRHYNARVRPRAF--------QVG---HLVLRRVQTHV

Query:  GALDPAWEGPFEIKGIVRPGTYILADLRGDVLAHPWNAEHLKRYYP
        G LDP+WEGPFE+KGI+R GTY+LADL G+VLAHPWNAEHLKRYYP
Subjt:  GALDPAWEGPFEIKGIVRPGTYILADLRGDVLAHPWNAEHLKRYYP

XP_022156575.1 uncharacterized protein LOC111023451 [Momordica charantia]6.3e-4193.48Show/hide
Query:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL
        +SAYETDLARSVPVEILDNPSILEPDL+E+GAPESSWMDPITDFIRGNSPQDPKERRKL RR AR VVRDGALYRRGFSLPLLKCLTPEEGL
Subjt:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL

XP_022158520.1 uncharacterized protein LOC111024991 [Momordica charantia]2.8e-4193.48Show/hide
Query:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL
        +SAYETDLARSVPVEILDNPSILEPDL+EIGAPESSWM+PITDFI+GNSPQDPKERRKL RRAARFV+RDGALYRRGFSLPLLKCLTPEEGL
Subjt:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]2.6e-3971.17Show/hide
Query:  VEHYEPTTNEDGLLLNLDLLEERRAMAQLRLAEYQGRMTRHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLRGDVLAHP
        +E YEP  NE  LLLNLDLLE +R  AQLRL E Q RM RHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL   VLAHP
Subjt:  VEHYEPTTNEDGLLLNLDLLEERRAMAQLRLAEYQGRMTRHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLRGDVLAHP

Query:  WNAEHLKRYYP
        WNAEHLKRYYP
Subjt:  WNAEHLKRYYP

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]3.4e-1051.81Show/hide
Query:  RGHAGKAGGACVGKTSRD---VDYASSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRK
        RG AG+   +C  + + D   +   +SAYETDLAR V +EILDNPSILEPD++E+  P  SWMDPI +FI+G   Q  KE  K
Subjt:  RGHAGKAGGACVGKTSRD---VDYASSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRK

TrEMBL top hitse value%identityAlignment
A0A6J1CQD7 Ribonuclease H6.8e-4193.48Show/hide
Query:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL
        +SAYETDLARSVPVEILDNPSI EPDL+EIGAPESSWMDPI DFIRGNSPQDPKERRKL RRAARFVVRDGALYRRGFSLPLL+CLTPEEGL
Subjt:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL

A0A6J1CSJ1 Ribonuclease H1.2e-4235.26Show/hide
Query:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGLV-------
        +SAYETDLARSV V ILDNPSILEPDL+E+  PE SWMDPI +FI+ N PQD K  +K+ R+ ARF++RDGALYRRGFSLPLLKC+TPE+G         
Subjt:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGLV-------

Query:  -------------------EHYEPTTNED-----------------------------------------------------------------------
                            +Y P  ++D                                                                       
Subjt:  -------------------EHYEPTTNED-----------------------------------------------------------------------

Query:  ----------------------------------GLLLNLDLLEERRAMAQLR-LAEYQGRMTRHYNARVRPRAF--------QVG---HLVLRRVQTHV
                                          GL + LD  + R A      L  Y+  +    +  +   AF        ++G   + V +++Q+HV
Subjt:  ----------------------------------GLLLNLDLLEERRAMAQLR-LAEYQGRMTRHYNARVRPRAF--------QVG---HLVLRRVQTHV

Query:  GALDPAWEGPFEIKGIVRPGTYILADLRGDVLAHPWNAEHLKRYYP
        G LDP+WEGPFE+KGI+R GTY+LADL G+VLAHPWNAEHLKRYYP
Subjt:  GALDPAWEGPFEIKGIVRPGTYILADLRGDVLAHPWNAEHLKRYYP

A0A6J1DQP4 Ribonuclease H3.0e-4193.48Show/hide
Query:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL
        +SAYETDLARSVPVEILDNPSILEPDL+E+GAPESSWMDPITDFIRGNSPQDPKERRKL RR AR VVRDGALYRRGFSLPLLKCLTPEEGL
Subjt:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL

A0A6J1DW30 Ribonuclease H1.4e-4193.48Show/hide
Query:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL
        +SAYETDLARSVPVEILDNPSILEPDL+EIGAPESSWM+PITDFI+GNSPQDPKERRKL RRAARFV+RDGALYRRGFSLPLLKCLTPEEGL
Subjt:  SSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGL

A0A6J1DXL9 uncharacterized protein LOC1110254481.3e-3971.17Show/hide
Query:  VEHYEPTTNEDGLLLNLDLLEERRAMAQLRLAEYQGRMTRHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLRGDVLAHP
        +E YEP  NE  LLLNLDLLE +R  AQLRL E Q RM RHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL   VLAHP
Subjt:  VEHYEPTTNEDGLLLNLDLLEERRAMAQLRLAEYQGRMTRHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLRGDVLAHP

Query:  WNAEHLKRYYP
        WNAEHLKRYYP
Subjt:  WNAEHLKRYYP

A0A6J1DXL9 uncharacterized protein LOC1110254481.6e-1051.81Show/hide
Query:  RGHAGKAGGACVGKTSRD---VDYASSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRK
        RG AG+   +C  + + D   +   +SAYETDLAR V +EILDNPSILEPD++E+  P  SWMDPI +FI+G   Q  KE  K
Subjt:  RGHAGKAGGACVGKTSRD---VDYASSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCGCGTGCAAAGGCTGATGGGGCGCAGTGTGAGCGCTAGAGGGGGTGTCGTGCTGAAGCTGGCGTGCATACAAGCAGTAGGTAGGCGTGGGCATGCAGGAAAGGC
AGGCGGGGCGTGCGTGGGCAAGACAAGCAGGGACGTTGATTACGCTTCATCGGCGTACGAGACCGACCTCGCCAGGTCGGTCCCCGTCGAGATCCTAGATAACCCTTCGA
TCTTAGAGCCAGATCTGATAGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCACGGACTTCATTAGGGGCAACTCACCACAAGATCCCAAGGAGCGCAGAAAG
TTGGTAAGGCGGGCAGCTCGGTTCGTGGTCCGAGATGGTGCATTGTACCGACGTGGCTTTTCCCTGCCTTTATTGAAATGCCTAACCCCTGAAGAGGGCCTAGTAGAGCA
TTACGAGCCTACGACGAATGAGGATGGGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGACCA
GACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTT
GAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAGAGGCGACGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCGCGTGCAAAGGCTGATGGGGCGCAGTGTGAGCGCTAGAGGGGGTGTCGTGCTGAAGCTGGCGTGCATACAAGCAGTAGGTAGGCGTGGGCATGCAGGAAAGGC
AGGCGGGGCGTGCGTGGGCAAGACAAGCAGGGACGTTGATTACGCTTCATCGGCGTACGAGACCGACCTCGCCAGGTCGGTCCCCGTCGAGATCCTAGATAACCCTTCGA
TCTTAGAGCCAGATCTGATAGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCACGGACTTCATTAGGGGCAACTCACCACAAGATCCCAAGGAGCGCAGAAAG
TTGGTAAGGCGGGCAGCTCGGTTCGTGGTCCGAGATGGTGCATTGTACCGACGTGGCTTTTCCCTGCCTTTATTGAAATGCCTAACCCCTGAAGAGGGCCTAGTAGAGCA
TTACGAGCCTACGACGAATGAGGATGGGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGACCA
GACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTT
GAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAGAGGCGACGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MVRVQRLMGRSVSARGGVVLKLACIQAVGRRGHAGKAGGACVGKTSRDVDYASSAYETDLARSVPVEILDNPSILEPDLIEIGAPESSWMDPITDFIRGNSPQDPKERRK
LVRRAARFVVRDGALYRRGFSLPLLKCLTPEEGLVEHYEPTTNEDGLLLNLDLLEERRAMAQLRLAEYQGRMTRHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPF
EIKGIVRPGTYILADLRGDVLAHPWNAEHLKRYYP