; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g26600 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g26600
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:19470140..19470553
RNA-Seq ExpressionMoc04g26600
SyntenyMoc04g26600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-1236.49Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI
        M  K+A++N+++ S+ +TG IT   S      ++Q   +A + +  L E S++  +V+  NPL+D             +PD +SVM+ D  T    MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        ERKI  LM+ +EE+D +I +L+ Q+ +R+ AESSQTP +K  DK K +
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]7.3e-1236.49Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLF------------DPNPDTVSVMITDASTMNEKMAEI
        M  K+A++ ++  SD +TG IT   S      ++Q   IA + +  L E S +  +V+  NPL+            + +PD +SVM+ D + +   MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLF------------DPNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        ERKI  LM+ ++E+D +IA+LK Q+++R+ AESSQTP +K++DK K +
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.3e-1236.49Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLF------------DPNPDTVSVMITDASTMNEKMAEI
        M  K+A++ ++  SD +TG IT   S      ++Q   IA + +  L E S +  +V+  NPL+            + +PD +SVM+ D + +   MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLF------------DPNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        ERKI  LM+ ++E+D +IA+LK Q+++R+ AESSQTP +K++DK K +
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]7.3e-1236.49Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLF------------DPNPDTVSVMITDASTMNEKMAEI
        M  K+A++ ++  SD +TG IT   S      ++Q   IA + +  L E S +  +V+  NPL+            + +PD +SVM+ D + +   MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLF------------DPNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        ERKI  LM+ ++E+D +IA+LK Q+++R+ AESSQTP +K++DK K +
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]7.3e-1236.49Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLF------------DPNPDTVSVMITDASTMNEKMAEI
        M  K+A++ ++  SD +TG IT   S      ++Q   IA + +  L E S +  +V+  NPL+            + +PD +SVM+ D + +   MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLF------------DPNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        ERKI  LM+ ++E+D +IA+LK Q+++R+ AESSQTP +K++DK K +
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

TrEMBL top hitse value%identityAlignment
A0A5A7U5H1 Ty3-gypsy retrotransposon protein1.1e-1048.89Show/hide
Query:  ENELVVNHNPLFD------PNPDTVSVMITDASTMNEKMAEIERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        EN  +  HN L +      P P+ +SVM+TD  T  ++MAE+E+K+  LM+ +EEKD +IA LKN IESRD AESS T T+K  +K K I
Subjt:  ENELVVNHNPLFD------PNPDTVSVMITDASTMNEKMAEIERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

A0A5A7UF60 Ty3-gypsy retrotransposon protein3.9e-1135.14Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI
        M  K+ ++N+ + SD +TG IT   S      ++Q   +  + +  L E S +  +V+  NPL+D             +PD +SVM+ D  T+   MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        E+KI  LM+ +EE+D +I +L+ Q+ +R+ AESSQTP +K  DK K +
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

A0A5D3BDK1 Ty3-gypsy retrotransposon protein1.8e-1137.67Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI
        M  K+A++N+++ SD +TG IT   S      ++Q   IA + +  L E S +  +V+  NPL+D             +PD +SV++TD  T    MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRK
        ERKI  LM+ +EE+D +I +L+ Q+ +R  AES+QTP +K  DK K
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRK

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.1e-1236.49Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI
        M  K+A++N+++ S+ +TG IT   S      ++Q   +A + +  L E S++  +V+  NPL+D             +PD +SVM+ D  T    MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        ERKI  LM+ +EE+D +I +L+ Q+ +R+ AESSQTP +K  DK K +
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

A0A5D3DXA8 Ty3-gypsy retrotransposon protein1.4e-1134.46Show/hide
Query:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI
        M  K+ ++N+++ SD +TG IT+         ++Q   +A + +  L E S++  +V+  NPL+D             +PD +S+M+ D  T+   MAE+
Subjt:  MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFD------------PNPDTVSVMITDASTMNEKMAEI

Query:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI
        ERKI  LM+ +EE++ +I +L+ Q+ +R+ AESSQTP +K  DK K +
Subjt:  ERKIRNLMETIEEKDSQIASLKNQIESRDIAESSQTPTLKINDKRKTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTAAAAGGGCTTCTGCAAATGCTGCTATCATGAGTGACCTTCATACTGGTTATATCACCTATGGTTACTCTGATGAATTCCAACCACGGGAAAATCAA
ACTCTTCCTATTGCTACGAACAAAGTAATAATTCTGCAAGAAACATCTATTGAAAATGAGCTTGTTGTTAATCATAACCCCTTATTTGATCCTAATCCTGACACA
GTCTCTGTTATGATAACTGATGCAAGCACTATGAATGAAAAAATGGCAGAAATCGAGAGGAAAATCAGAAATTTGATGGAGACTATCGAAGAAAAAGATTCTCAA
ATCGCCTCTCTGAAGAATCAGATTGAAAGTCGGGATATTGCAGAGTCGAGTCAAACCCCTACTCTCAAGATAAATGATAAGAGAAAGACTATTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTAAAAGGGCTTCTGCAAATGCTGCTATCATGAGTGACCTTCATACTGGTTATATCACCTATGGTTACTCTGATGAATTCCAACCACGGGAAAATCAA
ACTCTTCCTATTGCTACGAACAAAGTAATAATTCTGCAAGAAACATCTATTGAAAATGAGCTTGTTGTTAATCATAACCCCTTATTTGATCCTAATCCTGACACA
GTCTCTGTTATGATAACTGATGCAAGCACTATGAATGAAAAAATGGCAGAAATCGAGAGGAAAATCAGAAATTTGATGGAGACTATCGAAGAAAAAGATTCTCAA
ATCGCCTCTCTGAAGAATCAGATTGAAAGTCGGGATATTGCAGAGTCGAGTCAAACCCCTACTCTCAAGATAAATGATAAGAGAAAGACTATTGCTTAA
Protein sequenceShow/hide protein sequence
MEFKRASANAAIMSDLHTGYITYGYSDEFQPRENQTLPIATNKVIILQETSIENELVVNHNPLFDPNPDTVSVMITDASTMNEKMAEIERKIRNLMETIEEKDSQ
IASLKNQIESRDIAESSQTPTLKINDKRKTIA