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Moc04g26690 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g26690
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr4:19598996..19601017
RNA-Seq ExpressionMoc04g26690
SyntenyMoc04g26690
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026033.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.2e-0865.91Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYRKEERL
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DY+++  +
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYRKEERL
KAA0040355.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.9e-0876.92Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.9e-0876.92Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
KAA0058501.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.9e-0876.92Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.9e-0876.92Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
TrEMBL top hitse value%identityAlignment
A0A5A7SN16 Ty1-copia retrotransposon protein1.1e-0865.91Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYRKEERL
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DY+++  +
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYRKEERL
A0A5A7UYD5 Ty1-copia retrotransposon protein1.4e-0876.92Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
A0A5D3C9B4 Ty1-copia retrotransposon protein1.4e-0876.92Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
A0A5D3DJE2 Ty1-copia retrotransposon protein1.4e-0876.92Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
A0A5D3DSQ3 Ty1-copia retrotransposon protein1.4e-0876.92Show/hide
Query:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
        ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Subjt:  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTAGCTCTTGGTTTCAATTTTCCCGCTGCCATTGCTGCTGATGCCACCACTACCTCCGTTGCTACTACCACTATCGCCACGACGGCTTCCATCACTGTGTTCGT
CACTGATCCGCCTACCGTTGCAGCTGACACCGTTTTAGTTGTCGTTGCTGATCCCGGGACGTCTACTGCCGTTAATGAGTACGAGAACCTGGTGGCAAGTTCGTTGTCTA
AAGGTAAAAAGATGTGCGAGATTCTTCAGACCAATGTGTTGGTCGAGAAATTTCCTCCTTCCTGGAGTGATTATCGCAAAGAAGAAAGACTTGGACTCTGTCACGAGCTT
TTTGAAAAGGGTTATCGCTGGCAGATAGGAAATGGTCCGGATGTGACTATAGAAATATATGGATCCTTGGCTCCCAAGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTTAGCTCTTGGTTTCAATTTTCCCGCTGCCATTGCTGCTGATGCCACCACTACCTCCGTTGCTACTACCACTATCGCCACGACGGCTTCCATCACTGTGTTCGT
CACTGATCCGCCTACCGTTGCAGCTGACACCGTTTTAGTTGTCGTTGCTGATCCCGGGACGTCTACTGCCGTTAATGAGTACGAGAACCTGGTGGCAAGTTCGTTGTCTA
AAGGTAAAAAGATGTGCGAGATTCTTCAGACCAATGTGTTGGTCGAGAAATTTCCTCCTTCCTGGAGTGATTATCGCAAAGAAGAAAGACTTGGACTCTGTCACGAGCTT
TTTGAAAAGGGTTATCGCTGGCAGATAGGAAATGGTCCGGATGTGACTATAGAAATATATGGATCCTTGGCTCCCAAGGGATAG
Protein sequenceShow/hide protein sequence
MNLALGFNFPAAIAADATTTSVATTTIATTASITVFVTDPPTVAADTVLVVVADPGTSTAVNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYRKEERLGLCHEL
FEKGYRWQIGNGPDVTIEIYGSLAPKG