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Moc04g26960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g26960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr4:19811313..19812338
RNA-Seq ExpressionMoc04g26960
SyntenyMoc04g26960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151504.1 uncharacterized protein LOC111019429 [Momordica charantia]7.9e-1540.13Show/hide
Query:  AGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETM--TLEDMFKAYMVKNDAYIEKNGTIVQS
        A A K   +++  + C   +GEH F DCPGN  S    A TS APAYQQK  YPP F+ Q Q   P+  E    +LE++ K YM KNDA        VQS
Subjt:  AGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETM--TLEDMFKAYMVKNDAYIEKNGTIVQS

Query:  LAASLGNMEVQIGGKKQCKAITLKSGKTLPPTHPNAL-------RLYDELNQ
         AASL N+E+Q+G       +  K G ++ PT   A+        + +ELNQ
Subjt:  LAASLGNMEVQIGGKKQCKAITLKSGKTLPPTHPNAL-------RLYDELNQ

XP_022157438.1 uncharacterized protein LOC111024136 [Momordica charantia]1.2e-1536.63Show/hide
Query:  MMSIS-HSDAGAPKG--KENSVHNVSCPYYEGEHRFEDCPGNPTSIFCL----AGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKN
        M SI+  S AGA  G    N +  +SC +YEG+H + +CPGNP S        AGTS APA+QQK Q    F+              +LE + K YM  N
Subjt:  MMSIS-HSDAGAPKG--KENSVHNVSCPYYEGEHRFEDCPGNPTSIFCL----AGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKN

Query:  DAYIEKNGTIVQSLAASLGNMEVQIG-----------------GKKQCKAITLKSGKTLPPTHPNALRLYDE
        DA +E+  + +++L   +G +   +                  GK+QCKA+TL SGK LPP H NA  L  E
Subjt:  DAYIEKNGTIVQSLAASLGNMEVQIG-----------------GKKQCKAITLKSGKTLPPTHPNALRLYDE

XP_022158768.1 uncharacterized protein LOC111025234 [Momordica charantia]1.4e-4047.41Show/hide
Query:  MMSISHSDAGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDAYIEKN
        M SISHSDAGA K K NS+ NVSCPY + EH FEDCPGNP S+F L               P    G NQQA PKH ETMTLEDMFKAYM KN+ Y+ KN
Subjt:  MMSISHSDAGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDAYIEKN

Query:  GTIVQSLAASLGNMEVQIGGKKQCKAITLKSGKTLPPTHPNALRLYDELNQEEEIEANMTPITMPVKK-RTNLRELVN-TKQIVDPQSNTSEEDNQVAKT
         T +QSLAASLGN+++                KTL    PN   +++ LN E+E E + T ITM V+K  TN+ +LVN ++QIV+PQ NTSEE N + +T
Subjt:  GTIVQSLAASLGNMEVQIGGKKQCKAITLKSGKTLPPTHPNALRLYDELNQEEEIEANMTPITMPVKK-RTNLRELVN-TKQIVDPQSNTSEEDNQVAKT

Query:  DNAEASVSRQLKSQSIQNKPLLQQPQQNMFLK
         N  + V ++        K L ++ Q   F K
Subjt:  DNAEASVSRQLKSQSIQNKPLLQQPQQNMFLK

XP_022159060.1 uncharacterized protein LOC111025500 [Momordica charantia]1.8e-1435.71Show/hide
Query:  MMSISH-SDAGAPKGKENSVH--NVSCPYYEGEHRFEDCPGNPTSIFCL--AGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDA
        M S++H S  GA  GK N  H   +SC +  GE+R+ +CPGNP S+  L  A  +    Y  +  +  G              T+   ++ K  M+K   
Subjt:  MMSISH-SDAGAPKGKENSVH--NVSCPYYEGEHRFEDCPGNPTSIFCL--AGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDA

Query:  YIEKNGTIVQSLAASLGNMEVQIG------------------------GKKQCKAITLKSGKTLPPTHPNALRLYDELNQEE
        Y+E N T VQS A SL N+E+Q+G                        GK+QC A+TL+SGKTLP  HPNA  +  ELNQ+E
Subjt:  YIEKNGTIVQSLAASLGNMEVQIG------------------------GKKQCKAITLKSGKTLPPTHPNALRLYDELNQEE

XP_030494802.1 uncharacterized protein LOC115710583 [Cannabis sativa]7.4e-1337.76Show/hide
Query:  VSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQ--KVQYPPGFSGQ---NQQATPKHQETMTLEDMFKAYMVKNDAYIEKNGTIVQSLAASLGNMEV
        +SC Y    H FE+CP NP S+ C  G S + A Q   K  +PPGFS Q    Q   P+  +T +LE + + YM KNDA       ++QS AASL N+E+
Subjt:  VSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQ--KVQYPPGFSGQ---NQQATPKHQETMTLEDMFKAYMVKNDAYIEKNGTIVQSLAASLGNMEV

Query:  QIG------------------------GKKQCKAITLKSGKTL
        Q+G                        GK+ CKA+TL+SGK +
Subjt:  QIG------------------------GKKQCKAITLKSGKTL

TrEMBL top hitse value%identityAlignment
A0A6J1DDA0 uncharacterized protein LOC1110194293.8e-1540.13Show/hide
Query:  AGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETM--TLEDMFKAYMVKNDAYIEKNGTIVQS
        A A K   +++  + C   +GEH F DCPGN  S    A TS APAYQQK  YPP F+ Q Q   P+  E    +LE++ K YM KNDA        VQS
Subjt:  AGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETM--TLEDMFKAYMVKNDAYIEKNGTIVQS

Query:  LAASLGNMEVQIGGKKQCKAITLKSGKTLPPTHPNAL-------RLYDELNQ
         AASL N+E+Q+G       +  K G ++ PT   A+        + +ELNQ
Subjt:  LAASLGNMEVQIGGKKQCKAITLKSGKTLPPTHPNAL-------RLYDELNQ

A0A6J1DTD1 uncharacterized protein LOC1110241365.9e-1636.63Show/hide
Query:  MMSIS-HSDAGAPKG--KENSVHNVSCPYYEGEHRFEDCPGNPTSIFCL----AGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKN
        M SI+  S AGA  G    N +  +SC +YEG+H + +CPGNP S        AGTS APA+QQK Q    F+              +LE + K YM  N
Subjt:  MMSIS-HSDAGAPKG--KENSVHNVSCPYYEGEHRFEDCPGNPTSIFCL----AGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKN

Query:  DAYIEKNGTIVQSLAASLGNMEVQIG-----------------GKKQCKAITLKSGKTLPPTHPNALRLYDE
        DA +E+  + +++L   +G +   +                  GK+QCKA+TL SGK LPP H NA  L  E
Subjt:  DAYIEKNGTIVQSLAASLGNMEVQIG-----------------GKKQCKAITLKSGKTLPPTHPNALRLYDE

A0A6J1DWK1 uncharacterized protein LOC1110250531.8e-1237.09Show/hide
Query:  GTSYAPAYQQKVQYPPGFSGQNQQATPKHQE--TMTLEDMFKAYMVKNDAYIEKNGTIVQSLAASLGNMEVQIG------------------------GK
        G S AP +QQKV YPPGF+ Q Q       +    +LE++ K YM  NDA        VQS AASL N+E+Q+G                         K
Subjt:  GTSYAPAYQQKVQYPPGFSGQNQQATPKHQE--TMTLEDMFKAYMVKNDAYIEKNGTIVQSLAASLGNMEVQIG------------------------GK

Query:  KQCKAITLKSGKTLPPTHPNALRLYDELNQ------EEEIEANMTPITMPV
        +QC A+TL+SGK LPPTHPNA  L  E  Q      + E ++    + +P+
Subjt:  KQCKAITLKSGKTLPPTHPNALRLYDELNQ------EEEIEANMTPITMPV

A0A6J1DX14 uncharacterized protein LOC1110252346.9e-4147.41Show/hide
Query:  MMSISHSDAGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDAYIEKN
        M SISHSDAGA K K NS+ NVSCPY + EH FEDCPGNP S+F L               P    G NQQA PKH ETMTLEDMFKAYM KN+ Y+ KN
Subjt:  MMSISHSDAGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDAYIEKN

Query:  GTIVQSLAASLGNMEVQIGGKKQCKAITLKSGKTLPPTHPNALRLYDELNQEEEIEANMTPITMPVKK-RTNLRELVN-TKQIVDPQSNTSEEDNQVAKT
         T +QSLAASLGN+++                KTL    PN   +++ LN E+E E + T ITM V+K  TN+ +LVN ++QIV+PQ NTSEE N + +T
Subjt:  GTIVQSLAASLGNMEVQIGGKKQCKAITLKSGKTLPPTHPNALRLYDELNQEEEIEANMTPITMPVKK-RTNLRELVN-TKQIVDPQSNTSEEDNQVAKT

Query:  DNAEASVSRQLKSQSIQNKPLLQQPQQNMFLK
         N  + V ++        K L ++ Q   F K
Subjt:  DNAEASVSRQLKSQSIQNKPLLQQPQQNMFLK

A0A6J1DXK5 uncharacterized protein LOC1110255008.5e-1535.71Show/hide
Query:  MMSISH-SDAGAPKGKENSVH--NVSCPYYEGEHRFEDCPGNPTSIFCL--AGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDA
        M S++H S  GA  GK N  H   +SC +  GE+R+ +CPGNP S+  L  A  +    Y  +  +  G              T+   ++ K  M+K   
Subjt:  MMSISH-SDAGAPKGKENSVH--NVSCPYYEGEHRFEDCPGNPTSIFCL--AGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDA

Query:  YIEKNGTIVQSLAASLGNMEVQIG------------------------GKKQCKAITLKSGKTLPPTHPNALRLYDELNQEE
        Y+E N T VQS A SL N+E+Q+G                        GK+QC A+TL+SGKTLP  HPNA  +  ELNQ+E
Subjt:  YIEKNGTIVQSLAASLGNMEVQIG------------------------GKKQCKAITLKSGKTLPPTHPNALRLYDELNQEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGCATATCGCACTCAGATGCTGGAGCACCCAAGGGTAAGGAAAACAGTGTGCATAATGTTTCATGCCCTTATTACGAAGGAGAGCATCGTTTTGAGGATTGTCC
GGGCAACCCAACTTCAATATTTTGTTTGGCTGGAACAAGCTATGCTCCAGCATACCAACAGAAGGTGCAGTACCCACCTGGTTTTTCTGGGCAGAATCAACAGGCCACTC
CAAAGCATCAAGAGACTATGACCCTAGAGGATATGTTTAAGGCGTATATGGTAAAGAACGATGCTTATATAGAGAAGAATGGTACTATTGTTCAAAGTCTAGCTGCATCA
TTGGGGAATATGGAGGTGCAAATAGGTGGGAAGAAGCAATGTAAGGCCATTACATTGAAAAGCGGGAAGACATTACCTCCTACCCATCCAAATGCTCTAAGACTTTATGA
TGAACTAAATCAAGAAGAAGAAATTGAGGCAAACATGACACCTATAACCATGCCAGTTAAAAAAAGGACAAACCTCAGGGAGTTAGTGAACACTAAGCAGATAGTGGATC
CCCAAAGCAACACAAGCGAAGAGGACAACCAAGTTGCTAAGACAGACAATGCTGAAGCATCCGTGTCAAGGCAATTGAAAAGCCAAAGCATCCAGAACAAGCCACTGCTC
CAGCAACCACAACAAAATATGTTCCTAAAAGGCTGTCGAAAAAGAATCAAGATGGGCAGTTTACACGATTTCTTGAGGATGTGCTCACTAAGAAGTGCAGGCTGGGAGAG
TTTGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAGCATATCGCACTCAGATGCTGGAGCACCCAAGGGTAAGGAAAACAGTGTGCATAATGTTTCATGCCCTTATTACGAAGGAGAGCATCGTTTTGAGGATTGTCC
GGGCAACCCAACTTCAATATTTTGTTTGGCTGGAACAAGCTATGCTCCAGCATACCAACAGAAGGTGCAGTACCCACCTGGTTTTTCTGGGCAGAATCAACAGGCCACTC
CAAAGCATCAAGAGACTATGACCCTAGAGGATATGTTTAAGGCGTATATGGTAAAGAACGATGCTTATATAGAGAAGAATGGTACTATTGTTCAAAGTCTAGCTGCATCA
TTGGGGAATATGGAGGTGCAAATAGGTGGGAAGAAGCAATGTAAGGCCATTACATTGAAAAGCGGGAAGACATTACCTCCTACCCATCCAAATGCTCTAAGACTTTATGA
TGAACTAAATCAAGAAGAAGAAATTGAGGCAAACATGACACCTATAACCATGCCAGTTAAAAAAAGGACAAACCTCAGGGAGTTAGTGAACACTAAGCAGATAGTGGATC
CCCAAAGCAACACAAGCGAAGAGGACAACCAAGTTGCTAAGACAGACAATGCTGAAGCATCCGTGTCAAGGCAATTGAAAAGCCAAAGCATCCAGAACAAGCCACTGCTC
CAGCAACCACAACAAAATATGTTCCTAAAAGGCTGTCGAAAAAGAATCAAGATGGGCAGTTTACACGATTTCTTGAGGATGTGCTCACTAAGAAGTGCAGGCTGGGAGAG
TTTGAAATAG
Protein sequenceShow/hide protein sequence
MMSISHSDAGAPKGKENSVHNVSCPYYEGEHRFEDCPGNPTSIFCLAGTSYAPAYQQKVQYPPGFSGQNQQATPKHQETMTLEDMFKAYMVKNDAYIEKNGTIVQSLAAS
LGNMEVQIGGKKQCKAITLKSGKTLPPTHPNALRLYDELNQEEEIEANMTPITMPVKKRTNLRELVNTKQIVDPQSNTSEEDNQVAKTDNAEASVSRQLKSQSIQNKPLL
QQPQQNMFLKGCRKRIKMGSLHDFLRMCSLRSAGWESLK