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Moc04g27100 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g27100
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:19961569..19962357
RNA-Seq ExpressionMoc04g27100
SyntenyMoc04g27100
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]6.0e-6770.53Show/hide
Query:  MSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE-----
        M TQM TME+MY+EMVQAAGARS+SE+RVAR ++HE+RG HLGPV++  P G EDEEYTHQRGDLREHLNRKRSSSLRKG+SPSCSH++SNQQAE     
Subjt:  MSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE-----

Query:  -----------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQ
                                     CEKKE+SFD+GDLGESPFTSDILEA IP KFKTPT+K YDGSKDPKDYVEVFEGLMDFQAATDAIKCR FQ
Subjt:  -----------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQ

Query:  IALTGSA
        IALTGSA
Subjt:  IALTGSA

XP_022155128.1 uncharacterized protein LOC111022267 [Momordica charantia]3.2e-4467.53Show/hide
Query:  EDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE----------------------------------CEKKENSFDNGDLGESPFTSDILE
        EDEEYTHQRGDLREHLNRKRSSSLRKG+SPS SH++SNQQAE                                  CEKKE+SFD+GDLGE PFT DILE
Subjt:  EDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE----------------------------------CEKKENSFDNGDLGESPFTSDILE

Query:  APIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA
        API PKFKTPT+K YDGSK+PKDYV+VFEGLM+FQAATDAIKCR FQIA TGSA
Subjt:  APIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA

XP_022156088.1 uncharacterized protein LOC111023060 [Momordica charantia]1.7e-5361.43Show/hide
Query:  MEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE--
        MEAM TQMRTMEEMYN+MVQ AGARS+S D+V   +VHE+  LH  PV+EE           H  GDLR+HLNRKR+SS R  R+ +  HK+SNQQAE  
Subjt:  MEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE--

Query:  --------------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCR
                                        CEKKE++FD+GDLGESPFTSDILEA IPPKFKTPT+K YDGSKDPKDYVEVFEGLMDFQAATDAIKCR
Subjt:  --------------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCR

Query:  TFQIALTGSA
         FQIALTGSA
Subjt:  TFQIALTGSA

XP_022158652.1 uncharacterized protein LOC111025109 [Momordica charantia]6.7e-3462.22Show/hide
Query:  NRKRSSSLRKGRSPSCSHKSSNQQAE-------------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSK
        + KR SSLRKG+SPS SH+SSNQQAE                               CE+K++S ++GDLGE PFTSD+LEAPIPPKFK PT+K YDG+K
Subjt:  NRKRSSSLRKGRSPSCSHKSSNQQAE-------------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSK

Query:  DPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA
        DPKDYVEVFEGLMDFQAA+DAIKCR FQIALTGSA
Subjt:  DPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA

XP_022159327.1 uncharacterized protein LOC111025738 [Momordica charantia]2.7e-6763.24Show/hide
Query:  PVLPSAHPKPSKANRGRGGASKRTTRGPAPAPTRENFDALQKEMEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDE
        P L  AHPKP KANRGRGGAS+RTT G APAP+RENFDALQKEMEAM TQM TMEEMYNEMVQA GA S+SEDR AR E                     
Subjt:  PVLPSAHPKPSKANRGRGGASKRTTRGPAPAPTRENFDALQKEMEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDE

Query:  DEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE----------------------------------CEKKENSFDNGDLGESPFTSDILEA
               RGDLR+HL+RKRSSSLRKGRSPSCSHK+SNQQAE                                  CE K ++FD+GDLGESPFTSDILEA
Subjt:  DEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE----------------------------------CEKKENSFDNGDLGESPFTSDILEA

Query:  PIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA
         IP KFKTPT+K YDGSKDPKDYVEVFEGLM FQAATDAIK R FQIALT SA
Subjt:  PIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA

TrEMBL top hitse value%identityAlignment
A0A6J1DDW5 uncharacterized protein LOC1110196342.9e-6770.53Show/hide
Query:  MSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE-----
        M TQM TME+MY+EMVQAAGARS+SE+RVAR ++HE+RG HLGPV++  P G EDEEYTHQRGDLREHLNRKRSSSLRKG+SPSCSH++SNQQAE     
Subjt:  MSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE-----

Query:  -----------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQ
                                     CEKKE+SFD+GDLGESPFTSDILEA IP KFKTPT+K YDGSKDPKDYVEVFEGLMDFQAATDAIKCR FQ
Subjt:  -----------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQ

Query:  IALTGSA
        IALTGSA
Subjt:  IALTGSA

A0A6J1DM55 uncharacterized protein LOC1110222671.5e-4467.53Show/hide
Query:  EDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE----------------------------------CEKKENSFDNGDLGESPFTSDILE
        EDEEYTHQRGDLREHLNRKRSSSLRKG+SPS SH++SNQQAE                                  CEKKE+SFD+GDLGE PFT DILE
Subjt:  EDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE----------------------------------CEKKENSFDNGDLGESPFTSDILE

Query:  APIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA
        API PKFKTPT+K YDGSK+PKDYV+VFEGLM+FQAATDAIKCR FQIA TGSA
Subjt:  APIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA

A0A6J1DPN4 uncharacterized protein LOC1110230608.2e-5461.43Show/hide
Query:  MEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE--
        MEAM TQMRTMEEMYN+MVQ AGARS+S D+V   +VHE+  LH  PV+EE           H  GDLR+HLNRKR+SS R  R+ +  HK+SNQQAE  
Subjt:  MEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE--

Query:  --------------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCR
                                        CEKKE++FD+GDLGESPFTSDILEA IPPKFKTPT+K YDGSKDPKDYVEVFEGLMDFQAATDAIKCR
Subjt:  --------------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCR

Query:  TFQIALTGSA
         FQIALTGSA
Subjt:  TFQIALTGSA

A0A6J1DXR9 uncharacterized protein LOC1110251093.2e-3462.22Show/hide
Query:  NRKRSSSLRKGRSPSCSHKSSNQQAE-------------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSK
        + KR SSLRKG+SPS SH+SSNQQAE                               CE+K++S ++GDLGE PFTSD+LEAPIPPKFK PT+K YDG+K
Subjt:  NRKRSSSLRKGRSPSCSHKSSNQQAE-------------------------------CEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSK

Query:  DPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA
        DPKDYVEVFEGLMDFQAA+DAIKCR FQIALTGSA
Subjt:  DPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA

A0A6J1DZJ1 uncharacterized protein LOC1110257381.3e-6763.24Show/hide
Query:  PVLPSAHPKPSKANRGRGGASKRTTRGPAPAPTRENFDALQKEMEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDE
        P L  AHPKP KANRGRGGAS+RTT G APAP+RENFDALQKEMEAM TQM TMEEMYNEMVQA GA S+SEDR AR E                     
Subjt:  PVLPSAHPKPSKANRGRGGASKRTTRGPAPAPTRENFDALQKEMEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDE

Query:  DEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE----------------------------------CEKKENSFDNGDLGESPFTSDILEA
               RGDLR+HL+RKRSSSLRKGRSPSCSHK+SNQQAE                                  CE K ++FD+GDLGESPFTSDILEA
Subjt:  DEEYTHQRGDLREHLNRKRSSSLRKGRSPSCSHKSSNQQAE----------------------------------CEKKENSFDNGDLGESPFTSDILEA

Query:  PIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA
         IP KFKTPT+K YDGSKDPKDYVEVFEGLM FQAATDAIK R FQIALT SA
Subjt:  PIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGTTCTGCCGTCAGCACATCCAAAGCCATCCAAGGCCAATCGTGGCCGAGGTGGAGCTTCGAAGAGAACCACCCGGGGACCAGCCCCAGCTCCAACAAGGGAAAA
CTTCGATGCACTTCAGAAAGAAATGGAGGCAATGAGCACTCAGATGCGCACCATGGAAGAAATGTACAACGAGATGGTGCAAGCCGCAGGTGCTAGGTCTCAATCTGAAG
ACCGAGTGGCACGCGGCGAGGTGCACGAGCGCAGAGGTCTTCACCTCGGACCAGTCGAGGAAGAATGCCCTGGAGGAGATGAAGATGAAGAGTACACTCATCAGAGGGGT
GATCTCCGCGAGCATCTCAACAGAAAGAGAAGCTCGTCCCTCAGAAAGGGACGATCTCCGTCCTGCTCGCACAAGAGCTCCAACCAGCAGGCTGAGTGCGAGAAAAAAGA
AAATTCGTTCGATAATGGCGACCTAGGAGAATCACCATTCACTTCGGACATCCTGGAGGCTCCAATCCCTCCGAAGTTCAAAACTCCCACCATAAAGCTTTATGATGGGT
CTAAGGACCCAAAAGACTATGTTGAGGTCTTCGAAGGTCTCATGGATTTTCAGGCGGCAACAGACGCAATCAAGTGCCGCACCTTCCAGATCGCACTCACCGGCAGCGCG
ATTATGCTATCGAAGACTGCCGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGTTCTGCCGTCAGCACATCCAAAGCCATCCAAGGCCAATCGTGGCCGAGGTGGAGCTTCGAAGAGAACCACCCGGGGACCAGCCCCAGCTCCAACAAGGGAAAA
CTTCGATGCACTTCAGAAAGAAATGGAGGCAATGAGCACTCAGATGCGCACCATGGAAGAAATGTACAACGAGATGGTGCAAGCCGCAGGTGCTAGGTCTCAATCTGAAG
ACCGAGTGGCACGCGGCGAGGTGCACGAGCGCAGAGGTCTTCACCTCGGACCAGTCGAGGAAGAATGCCCTGGAGGAGATGAAGATGAAGAGTACACTCATCAGAGGGGT
GATCTCCGCGAGCATCTCAACAGAAAGAGAAGCTCGTCCCTCAGAAAGGGACGATCTCCGTCCTGCTCGCACAAGAGCTCCAACCAGCAGGCTGAGTGCGAGAAAAAAGA
AAATTCGTTCGATAATGGCGACCTAGGAGAATCACCATTCACTTCGGACATCCTGGAGGCTCCAATCCCTCCGAAGTTCAAAACTCCCACCATAAAGCTTTATGATGGGT
CTAAGGACCCAAAAGACTATGTTGAGGTCTTCGAAGGTCTCATGGATTTTCAGGCGGCAACAGACGCAATCAAGTGCCGCACCTTCCAGATCGCACTCACCGGCAGCGCG
ATTATGCTATCGAAGACTGCCGGCTAG
Protein sequenceShow/hide protein sequence
MPVLPSAHPKPSKANRGRGGASKRTTRGPAPAPTRENFDALQKEMEAMSTQMRTMEEMYNEMVQAAGARSQSEDRVARGEVHERRGLHLGPVEEECPGGDEDEEYTHQRG
DLREHLNRKRSSSLRKGRSPSCSHKSSNQQAECEKKENSFDNGDLGESPFTSDILEAPIPPKFKTPTIKLYDGSKDPKDYVEVFEGLMDFQAATDAIKCRTFQIALTGSA
IMLSKTAG