; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g27290 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g27290
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:20106711..20110163
RNA-Seq ExpressionMoc04g27290
SyntenyMoc04g27290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.0e-4458.59Show/hide
Query:  KQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMD
        +QHK PAP GGKSDH+DR+SEP SLDKGKPAD+PESSEKRHNQK+KGFDLEELLDQADSPFTEEIMREK                               
Subjt:  KQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMD

Query:  IYGVSKLVRCRTAESLHDYVARFNEEKLQVEGL---------MSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAA-IDIQRSCDNDKRQVLSKQRS
                  RT ESLHDYV RFN+EKLQVEGL         + GVRDEHLSFSF K+TPSTFSEALSRAQRYMSA      +   N KR    ++RS
Subjt:  IYGVSKLVRCRTAESLHDYVARFNEEKLQVEGL---------MSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAA-IDIQRSCDNDKRQVLSKQRS

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]3.2e-3453.85Show/hide
Query:  EEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMDIYGVSKLVRC----------------------------------------------------
        EEIM+ KVPPKFKLPTVKQFDGT + VDHLDAYREWMDIYGVS+ V+C                                                    
Subjt:  EEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMDIYGVSKLVRC----------------------------------------------------

Query:  ---RTAESLHDYVARFNEEKLQVEGL---------MSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSA
           R  ESLHDYVARFNEEKLQVEGL         MS +RDEHLSFSF KKTPSTFSEALSRAQ+YMSA
Subjt:  ---RTAESLHDYVARFNEEKLQVEGL---------MSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSA

XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]3.4e-3691.4Show/hide
Query:  RQVLSKQRSLHNYSSSVLRVGAIVMENKNDPKRDKELKSEIIDWGRPARDVTGRPKERPNAGTKNEESDWRRTNLAERARSRPGARSRPGPRS
        RQVLSKQRSLHNYSSSVLRVGAIVMENKNDPKRDKELKSEIIDWGRPARDVTGRPKERPNAG KNEESDWRRTN AERARSRP    RP  RS
Subjt:  RQVLSKQRSLHNYSSSVLRVGAIVMENKNDPKRDKELKSEIIDWGRPARDVTGRPKERPNAGTKNEESDWRRTNLAERARSRPGARSRPGPRS

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.8e-6965.95Show/hide
Query:  KKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWM
        KKQHK PAP GGKSDHDDRNSEP SLDKGKPAD+PESSEKRH+ KEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFD TT+PVDHLDAYREWM
Subjt:  KKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWM

Query:  DIYGVSKLVRC-------------------------------------------------------RTAESLHDYVARFNEEKLQVEGL---------MS
        DIYGVS+ VRC                                                       RT ESL DYVARFNEEKLQVEGL         MS
Subjt:  DIYGVSKLVRC-------------------------------------------------------RTAESLHDYVARFNEEKLQVEGL---------MS

Query:  GVRDEHLSFSFRKKTPSTFSEALSRAQRYMSA
        GVRDEHLSFSF K+TP+TFSEALSRAQRYMSA
Subjt:  GVRDEHLSFSFRKKTPSTFSEALSRAQRYMSA

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]8.3e-6763.25Show/hide
Query:  MKKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREW
        +KKQHK  AP G K+DHD+RNSEP SL+KGKP D+PESSEKRHNQKEKGFDLEELL QADSPFTEEIMREKVPPKFKLPTVK FDG T PVDHLDAYREW
Subjt:  MKKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREW

Query:  MDIYGVSKLVRC-------------------------------------------------------RTAESLHDYVARFNEEKLQVEGL---------M
        MDIYGVS  +RC                                                       RTAESLHDYVARFNEEKLQ+EGL         M
Subjt:  MDIYGVSKLVRC-------------------------------------------------------RTAESLHDYVARFNEEKLQVEGL---------M

Query:  SGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAA
        SGVRDEHLSFSF K+TPSTFSEALSRAQRYMSA+
Subjt:  SGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAA

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128059.6e-4558.59Show/hide
Query:  KQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMD
        +QHK PAP GGKSDH+DR+SEP SLDKGKPAD+PESSEKRHNQK+KGFDLEELLDQADSPFTEEIMREK                               
Subjt:  KQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMD

Query:  IYGVSKLVRCRTAESLHDYVARFNEEKLQVEGL---------MSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAA-IDIQRSCDNDKRQVLSKQRS
                  RT ESLHDYV RFN+EKLQVEGL         + GVRDEHLSFSF K+TPSTFSEALSRAQRYMSA      +   N KR    ++RS
Subjt:  IYGVSKLVRCRTAESLHDYVARFNEEKLQVEGL---------MSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAA-IDIQRSCDNDKRQVLSKQRS

A0A6J1D7D2 uncharacterized protein LOC1110183071.5e-3453.85Show/hide
Query:  EEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMDIYGVSKLVRC----------------------------------------------------
        EEIM+ KVPPKFKLPTVKQFDGT + VDHLDAYREWMDIYGVS+ V+C                                                    
Subjt:  EEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMDIYGVSKLVRC----------------------------------------------------

Query:  ---RTAESLHDYVARFNEEKLQVEGL---------MSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSA
           R  ESLHDYVARFNEEKLQVEGL         MS +RDEHLSFSF KKTPSTFSEALSRAQ+YMSA
Subjt:  ---RTAESLHDYVARFNEEKLQVEGL---------MSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSA

A0A6J1DPJ5 uncharacterized protein LOC1110230161.6e-3691.4Show/hide
Query:  RQVLSKQRSLHNYSSSVLRVGAIVMENKNDPKRDKELKSEIIDWGRPARDVTGRPKERPNAGTKNEESDWRRTNLAERARSRPGARSRPGPRS
        RQVLSKQRSLHNYSSSVLRVGAIVMENKNDPKRDKELKSEIIDWGRPARDVTGRPKERPNAG KNEESDWRRTN AERARSRP    RP  RS
Subjt:  RQVLSKQRSLHNYSSSVLRVGAIVMENKNDPKRDKELKSEIIDWGRPARDVTGRPKERPNAGTKNEESDWRRTNLAERARSRPGARSRPGPRS

A0A6J1DWY0 uncharacterized protein LOC1110252938.6e-7065.95Show/hide
Query:  KKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWM
        KKQHK PAP GGKSDHDDRNSEP SLDKGKPAD+PESSEKRH+ KEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFD TT+PVDHLDAYREWM
Subjt:  KKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWM

Query:  DIYGVSKLVRC-------------------------------------------------------RTAESLHDYVARFNEEKLQVEGL---------MS
        DIYGVS+ VRC                                                       RT ESL DYVARFNEEKLQVEGL         MS
Subjt:  DIYGVSKLVRC-------------------------------------------------------RTAESLHDYVARFNEEKLQVEGL---------MS

Query:  GVRDEHLSFSFRKKTPSTFSEALSRAQRYMSA
        GVRDEHLSFSF K+TP+TFSEALSRAQRYMSA
Subjt:  GVRDEHLSFSFRKKTPSTFSEALSRAQRYMSA

A0A6J1E1E7 uncharacterized protein LOC1110255484.0e-6763.25Show/hide
Query:  MKKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREW
        +KKQHK  AP G K+DHD+RNSEP SL+KGKP D+PESSEKRHNQKEKGFDLEELL QADSPFTEEIMREKVPPKFKLPTVK FDG T PVDHLDAYREW
Subjt:  MKKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREW

Query:  MDIYGVSKLVRC-------------------------------------------------------RTAESLHDYVARFNEEKLQVEGL---------M
        MDIYGVS  +RC                                                       RTAESLHDYVARFNEEKLQ+EGL         M
Subjt:  MDIYGVSKLVRC-------------------------------------------------------RTAESLHDYVARFNEEKLQVEGL---------M

Query:  SGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAA
        SGVRDEHLSFSF K+TPSTFSEALSRAQRYMSA+
Subjt:  SGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAGCAACATAAACCCCCGGCACCAATTGGGGGCAAGAGCGACCATGATGATAGAAACTCTGAGCCGACAAGTCTCGACAAAGGCAAACCGGCAGATCAG
CCAGAGTCCTCGGAGAAGCGACATAACCAAAAAGAGAAGGGATTCGACCTCGAAGAACTACTGGATCAAGCCGACTCACCATTCACGGAGGAGATCATGAGAGAG
AAGGTCCCTCCAAAGTTCAAGCTACCCACGGTGAAACAATTCGACGGGACGACCAACCCAGTGGACCATCTAGATGCTTATCGGGAATGGATGGATATCTACGGA
GTGTCGAAATTGGTCAGGTGCCGGACGGCAGAGAGTCTACACGACTATGTAGCTCGGTTCAACGAGGAGAAGCTGCAGGTAGAAGGCCTCATGTCCGGCGTCAGG
GATGAGCATTTATCATTTTCGTTCAGAAAGAAAACACCGAGTACCTTCTCGGAGGCGCTGAGCCGAGCTCAGAGGTACATGAGCGCTGCCATTGATATACAACGG
TCTTGTGATAACGACAAGCGACAAGTACTCTCAAAACAAAGATCTTTACACAATTATTCGTCTTCTGTTTTGAGAGTGGGGGCCATTGTTATGGAGAACAAAAAC
GACCCGAAAAGGGACAAGGAGTTAAAGTCTGAGATCATTGATTGGGGGAGACCGGCCCGTGACGTAACGGGCCGGCCCAAAGAACGACCTAATGCTGGGACAAAG
AACGAGGAAAGCGACTGGCGGAGAACTAACCTGGCCGAGAGGGCTCGGTCCCGACCTGGGGCTCGGTCCCGACCCGGGCCTCGGTCCAGACCCGGGGCTCGGCCC
ACGGTCCAGCCAACGATCCCCCATCTTCGATCGACGATTCCGCCCAGGCCCTACAATGGTGAATTAGGGTTAGCTATGGAAAGTTCTGGAACAACTACACGCTAT
AAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAGCAACATAAACCCCCGGCACCAATTGGGGGCAAGAGCGACCATGATGATAGAAACTCTGAGCCGACAAGTCTCGACAAAGGCAAACCGGCAGATCAG
CCAGAGTCCTCGGAGAAGCGACATAACCAAAAAGAGAAGGGATTCGACCTCGAAGAACTACTGGATCAAGCCGACTCACCATTCACGGAGGAGATCATGAGAGAG
AAGGTCCCTCCAAAGTTCAAGCTACCCACGGTGAAACAATTCGACGGGACGACCAACCCAGTGGACCATCTAGATGCTTATCGGGAATGGATGGATATCTACGGA
GTGTCGAAATTGGTCAGGTGCCGGACGGCAGAGAGTCTACACGACTATGTAGCTCGGTTCAACGAGGAGAAGCTGCAGGTAGAAGGCCTCATGTCCGGCGTCAGG
GATGAGCATTTATCATTTTCGTTCAGAAAGAAAACACCGAGTACCTTCTCGGAGGCGCTGAGCCGAGCTCAGAGGTACATGAGCGCTGCCATTGATATACAACGG
TCTTGTGATAACGACAAGCGACAAGTACTCTCAAAACAAAGATCTTTACACAATTATTCGTCTTCTGTTTTGAGAGTGGGGGCCATTGTTATGGAGAACAAAAAC
GACCCGAAAAGGGACAAGGAGTTAAAGTCTGAGATCATTGATTGGGGGAGACCGGCCCGTGACGTAACGGGCCGGCCCAAAGAACGACCTAATGCTGGGACAAAG
AACGAGGAAAGCGACTGGCGGAGAACTAACCTGGCCGAGAGGGCTCGGTCCCGACCTGGGGCTCGGTCCCGACCCGGGCCTCGGTCCAGACCCGGGGCTCGGCCC
ACGGTCCAGCCAACGATCCCCCATCTTCGATCGACGATTCCGCCCAGGCCCTACAATGGTGAATTAGGGTTAGCTATGGAAAGTTCTGGAACAACTACACGCTAT
AAGTAG
Protein sequenceShow/hide protein sequence
MKKQHKPPAPIGGKSDHDDRNSEPTSLDKGKPADQPESSEKRHNQKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDGTTNPVDHLDAYREWMDIYG
VSKLVRCRTAESLHDYVARFNEEKLQVEGLMSGVRDEHLSFSFRKKTPSTFSEALSRAQRYMSAAIDIQRSCDNDKRQVLSKQRSLHNYSSSVLRVGAIVMENKN
DPKRDKELKSEIIDWGRPARDVTGRPKERPNAGTKNEESDWRRTNLAERARSRPGARSRPGPRSRPGARPTVQPTIPHLRSTIPPRPYNGELGLAMESSGTTTRY
K