; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g27730 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g27730
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr4:20472706..20473122
RNA-Seq ExpressionMoc04g27730
SyntenyMoc04g27730
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031936.1 Copia protein [Cucumis melo var. makuwa]1.5e-3375.49Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        SI RYKARLVA GYTQQEGLDY + FSPV+K+V+VK LLTI VS  WPLVQLD+NNAFL+G+LFEEVYMDLPLGYK      QGE+ VCRLHKSIYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  AS
        AS
Subjt:  AS

KAA0068025.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]1.1e-3173.53Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        SI RYK RLVA GYTQQEGLDY + FS V K+V+VK LLTI VS  WPL+QLD+NNAFL+G+LFEEVYMDLPLGYK      QGE+LVCRLHKSIYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  AS
        AS
Subjt:  AS

TYK16758.1 Copia protein [Cucumis melo var. makuwa]1.5e-3375.49Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        SI RYKARLVA GYTQQEGLDY + FSPV+K+V+VK LLTI VS  WPLVQLD+NNAFL+G+LFEEVYMDLPLGYK      QGE+ VCRLHKSIYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  AS
        AS
Subjt:  AS

TYK18103.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]1.1e-3173.53Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        SI RYK RLVA GYTQQEGLDY + FS V K+V+VK LLTI VS  WPL+QLD+NNAFL+G+LFEEVYMDLPLGYK      QGE+LVCRLHKSIYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  AS
        AS
Subjt:  AS

XP_022154919.1 uncharacterized protein LOC111022065 [Momordica charantia]1.2e-3080.46Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERL
        SI RYKARLVA GYTQQEGLDYI+ FSPV+KLV+VKVLLT+ VS NW LVQLD+NNAFL+GDLFEEVYMDLPLGYKH VV  QG  L
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERL

TrEMBL top hitse value%identityAlignment
A0A5A7SPL5 Copia protein7.4e-3475.49Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        SI RYKARLVA GYTQQEGLDY + FSPV+K+V+VK LLTI VS  WPLVQLD+NNAFL+G+LFEEVYMDLPLGYK      QGE+ VCRLHKSIYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  AS
        AS
Subjt:  AS

A0A5A7VQN7 Cysteine-rich RLK (Receptor-like protein kinase) 85.3e-3273.53Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        SI RYK RLVA GYTQQEGLDY + FS V K+V+VK LLTI VS  WPL+QLD+NNAFL+G+LFEEVYMDLPLGYK      QGE+LVCRLHKSIYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  AS
        AS
Subjt:  AS

A0A5D3CZP1 Copia protein7.4e-3475.49Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        SI RYKARLVA GYTQQEGLDY + FSPV+K+V+VK LLTI VS  WPLVQLD+NNAFL+G+LFEEVYMDLPLGYK      QGE+ VCRLHKSIYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  AS
        AS
Subjt:  AS

A0A5D3D1N3 Cysteine-rich RLK (Receptor-like protein kinase) 85.3e-3273.53Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        SI RYK RLVA GYTQQEGLDY + FS V K+V+VK LLTI VS  WPL+QLD+NNAFL+G+LFEEVYMDLPLGYK      QGE+LVCRLHKSIYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  AS
        AS
Subjt:  AS

A0A6J1DNP7 uncharacterized protein LOC1110220655.9e-3180.46Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERL
        SI RYKARLVA GYTQQEGLDYI+ FSPV+KLV+VKVLLT+ VS NW LVQLD+NNAFL+GDLFEEVYMDLPLGYKH VV  QG  L
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERL

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.1e-1745Show/hide
Query:  IRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQAS
        IRYKARLVA G+TQ+  +DY + F+PV+++ S + +L++ +  N  + Q+D+  AFLNG L EE+YM LP G   N         VC+L+K+IYG+ QA+
Subjt:  IRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQAS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-1946Show/hide
Query:  IIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQA
        ++RYKARLV  G+ Q++G+D+ + FSPV K+ S++ +L++  SL+  + QLD+  AFL+GDL EE+YM+ P G++   VA + + +VC+L+KS+YG+ QA
Subjt:  IIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.9e-2148.51Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        S+ RYKARLVA GY Q+ GLDY + FSPV K  S++++L + V  +WP+ QLD+NNAFL G L ++VYM  P G+    +       VC+L K++YG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  A
        A
Subjt:  A

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.1e-2152.48Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ
        S+ RYKARLVA GY Q+ GLDY + FSPV K  S++++L + V  +WP+ QLD+NNAFL G L +EVYM  P G+    V       VCRL K+IYG+ Q
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERLVCRLHKSIYGVIQ

Query:  A
        A
Subjt:  A

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.9e-2762.26Show/hide
Query:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERL----VCRLHKSIY
        +I RYKARLVA GYTQQEG+D+I+ FSPV KL SVK++L I+   N+ L QLDI+NAFLNGDL EE+YM LP GY     A QG+ L    VC L KSIY
Subjt:  SIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLGYKHNVVASQGERL----VCRLHKSIY

Query:  GVIQAS
        G+ QAS
Subjt:  GVIQAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATGCATGTTGAGTTACACGTCATGGAAGCAAACCATAGTTGGTTCGTTGTCCCTTTACCTTCTGAACATCATTCTATTGGCTGCAAATGGGTGTACAAGATCAAG
TATCATTCGTTATAAGGCTCGACTTGTTGCAAATGGGTACACTCAACAGGAAGGCCTTGACTATATCAAGGCGTTCTCTCCCGTTTCCAAGCTTGTTAGTGTCAAAGTTT
TGCTTACCATCACTGTCTCTTTGAATTGGCCATTGGTGCAGCTAGACATTAACAATGCTTTTTTGAATGGCGATCTTTTTGAGGAGGTATATATGGATTTGCCGTTAGGC
TACAAGCACAATGTTGTTGCTTCTCAGGGGGAGCGTTTAGTATGTCGGCTTCATAAGTCCATTTACGGTGTTATACAAGCATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACATGCATGTTGAGTTACACGTCATGGAAGCAAACCATAGTTGGTTCGTTGTCCCTTTACCTTCTGAACATCATTCTATTGGCTGCAAATGGGTGTACAAGATCAAG
TATCATTCGTTATAAGGCTCGACTTGTTGCAAATGGGTACACTCAACAGGAAGGCCTTGACTATATCAAGGCGTTCTCTCCCGTTTCCAAGCTTGTTAGTGTCAAAGTTT
TGCTTACCATCACTGTCTCTTTGAATTGGCCATTGGTGCAGCTAGACATTAACAATGCTTTTTTGAATGGCGATCTTTTTGAGGAGGTATATATGGATTTGCCGTTAGGC
TACAAGCACAATGTTGTTGCTTCTCAGGGGGAGCGTTTAGTATGTCGGCTTCATAAGTCCATTTACGGTGTTATACAAGCATCCTGA
Protein sequenceShow/hide protein sequence
MTCMLSYTSWKQTIVGSLSLYLLNIILLAANGCTRSSIIRYKARLVANGYTQQEGLDYIKAFSPVSKLVSVKVLLTITVSLNWPLVQLDINNAFLNGDLFEEVYMDLPLG
YKHNVVASQGERLVCRLHKSIYGVIQAS