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Moc04g28200 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g28200
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSmall nuclear ribonucleoprotein Sm D2
Genome locationchr4:20835383..20837425
RNA-Seq ExpressionMoc04g28200
SyntenyMoc04g28200
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027248 - Small nuclear ribonucleoprotein Sm D2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001241022.1 uncharacterized protein LOC100793233 [Glycine max]6.2e-4294.62Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

XP_003630987.1 small nuclear ribonucleoprotein Sm D2 [Medicago truncatula]6.2e-4294.62Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

XP_019464922.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Lupinus angustifolius]3.6e-4294.62Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

XP_022146455.1 small nuclear ribonucleoprotein Sm D2-like [Momordica charantia]2.5e-4396.77Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

XP_042477120.1 small nuclear ribonucleoprotein Sm D2 isoform X2 [Macadamia integrifolia]1.6e-4295.7Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDAT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

TrEMBL top hitse value%identityAlignment
A0A1S2YDS1 Small nuclear ribonucleoprotein Sm D23.0e-4294.62Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

A0A445F826 Small nuclear ribonucleoprotein Sm D23.0e-4294.62Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

A0A6A4QKF7 Small nuclear ribonucleoprotein Sm D23.0e-4293.55Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPM+ED  TKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

A0A6J1CZE7 Small nuclear ribonucleoprotein Sm D21.2e-4396.77Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

G7LBH6 Small nuclear ribonucleoprotein Sm D23.0e-4294.62Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MSRPMEEDA  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

SwissProt top hitse value%identityAlignment
P62316 Small nuclear ribonucleoprotein Sm D21.2e-3579.78Show/hide
Query:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        M  +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+I+ +
Subjt:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

P62317 Small nuclear ribonucleoprotein Sm D21.2e-3579.78Show/hide
Query:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        M  +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+I+ +
Subjt:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

Q18786 Probable small nuclear ribonucleoprotein Sm D22.7e-3275.28Show/hide
Query:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        M  +     E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKGKKKA+ V KDRFI+ +
Subjt:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

Q3SZF8 Small nuclear ribonucleoprotein Sm D21.2e-3579.78Show/hide
Query:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        M  +   K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+I+ +
Subjt:  MEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

Q9VI10 Probable small nuclear ribonucleoprotein Sm D23.4e-3584.15Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        + EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDRFI+ +
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

Arabidopsis top hitse value%identityAlignment
AT2G47640.1 Small nuclear ribonucleoprotein family protein1.1e-4187.23Show/hide
Query:  MSRPMEEDATT-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MS+PMEED    K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFI+ +
Subjt:  MSRPMEEDATT-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

AT2G47640.2 Small nuclear ribonucleoprotein family protein6.0e-4388.17Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MS+PMEED   K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

AT2G47640.3 Small nuclear ribonucleoprotein family protein6.0e-4388.17Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MS+PMEED   K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

AT2G47640.4 Small nuclear ribonucleoprotein family protein1.1e-4187.23Show/hide
Query:  MSRPMEEDATT-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MS+PMEED    K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFI+ +
Subjt:  MSRPMEEDATT-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL

AT3G62840.2 Small nuclear ribonucleoprotein family protein6.0e-4388.17Show/hide
Query:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL
        MS+PMEED   K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFI+ +
Subjt:  MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCGACCAATGGAGGAAGATGCTACTACTAAGAATGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTTAAAAACAACACTCAGGTCCT
CATAAATTGTCGCAACAACAAAAAGCTATTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACCGAGGTACCAAAAA
CTGGGAAGGGCAAGAAAAAAGCTCAACCTGTTAACAAGGACAGATTCATCACAGCCTTGGTTAAGGACGTCATTTTGTTTTGTTCGACAAGTGATATTATCTTTCAGAAT
TATGAGAATCCGGGCTTGGAAGATAAGGTGCTATTCCTGGAGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCGACCAATGGAGGAAGATGCTACTACTAAGAATGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTTAAAAACAACACTCAGGTCCT
CATAAATTGTCGCAACAACAAAAAGCTATTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACCGAGGTACCAAAAA
CTGGGAAGGGCAAGAAAAAAGCTCAACCTGTTAACAAGGACAGATTCATCACAGCCTTGGTTAAGGACGTCATTTTGTTTTGTTCGACAAGTGATATTATCTTTCAGAAT
TATGAGAATCCGGGCTTGGAAGATAAGGTGCTATTCCTGGAGTCTTGA
Protein sequenceShow/hide protein sequence
MSRPMEEDATTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFITALVKDVILFCSTSDIIFQN
YENPGLEDKVLFLES