; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g28500 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g28500
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:21108070..21109016
RNA-Seq ExpressionMoc04g28500
SyntenyMoc04g28500
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8709065.1 hypothetical protein F3Y22_tig00110332pilonHSYRG00834 [Hibiscus syriacus]6.9e-2940.71Show/hide
Query:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--EQFHTLWIEKCT
        D+EKFD  INF LWQ+QVKD++IQS L+KALKG+P+   SE  +    P +   +  +S MS+E+WEE+D+RAAS IR  LAKN+L  E+FH L +E+ T
Subjt:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--EQFHTLWIEKCT

Query:  KISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI---------------------------------------SSHEESALVASNWKKKKYFVQKKAC
        KIS H S LN I  +LE+I VKIDDED  L LI  +                                        S E  AL     +KK    ++K  
Subjt:  KISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI---------------------------------------SSHEESALVASNWKKKKYFVQKKAC

Query:  CWGCEQSGHIEKKCPNKAGSSKGSSR
        CWGC Q GH++  C N   +S   S+
Subjt:  CWGCEQSGHIEKKCPNKAGSSKGSSR

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]7.3e-3139.15Show/hide
Query:  VNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL-----------
        +  ++EKFD  INF LWQ+QVKD++IQS LHKALKGRP+ + S +               RS MSDEDWE++DLRAASAIR  LAKN+L           
Subjt:  VNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL-----------

Query:  ---------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVISSHEES-------------------------
                             EQFHTL + + T IS H S LN I  +LE+I VKIDDED  L LI  + S  E                          
Subjt:  ---------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVISSHEES-------------------------

Query:  --------------ALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNK-AGSSKGS
                      A+V +   KKK  ++ K  CWGC QSGH++K CP   AGS+ GS
Subjt:  --------------ALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNK-AGSSKGS

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.4e-2936.16Show/hide
Query:  SPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL---------
        SP+  D+EK+D  INF LWQ+QVKD++IQS LHKAL+G+P+  +S++  G             S   DE+WE++DLRAASAIR  LAKN+L         
Subjt:  SPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL---------

Query:  -----------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI-----------------------------
                               EQFHTL ++  TKIS H S LN+I  +LEAI VK++DED  L LIL +                             
Subjt:  -----------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI-----------------------------

Query:  ----------SSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNKAGSSKGSSRMLTVFLSSGE
                  +S E + L+  N KKK    QK   CW C QSGH+++ CP  A S+  S     V +  G+
Subjt:  ----------SSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNKAGSSKGSSRMLTVFLSSGE

KAF7802225.1 cytochrome p450 [Senna tora]4.9e-3546.02Show/hide
Query:  MSFFMSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL----
        MS F S V  D+EKFD  INF LWQ+QVKD++IQS LHKAL+G+ S   SE                 SSMSD DWEE+DLRAAS IR SLAKN+L    
Subjt:  MSFFMSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL----

Query:  ----------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI-SSHEESALVASNWKKKKYFVQKK
                                    EQFHTL +++ TKIS H S LNSI  +LEAI VKIDDED TL LI  + SS+E    +  + +KK     K 
Subjt:  ----------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI-SSHEESALVASNWKKKKYFVQKK

Query:  ACCWGCEQSGHIEKKCPNKAGSSKGS
          CW C +SGH++K CP  A  + GS
Subjt:  ACCWGCEQSGHIEKKCPNKAGSSKGS

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]4.6e-5754.02Show/hide
Query:  MSFFMSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLR----SSMSDEDWEEMDLRAASAIRTSLAKNIL
        MSFFMSPV ID+EKFD MINF LWQ+QVKD++IQS LHKALKGRPSE ASE L  +GGP+E      R    SSMS EDWEEMDLRAASAIRTSLAKNIL
Subjt:  MSFFMSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLR----SSMSDEDWEEMDLRAASAIRTSLAKNIL

Query:  --------------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI--------------------
                                        EQFHTL +E+  KIS H SNLNSI F+LEAIEVKIDDED  L LIL +                    
Subjt:  --------------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI--------------------

Query:  -------------------SSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNK
                           +SHE+SALV SNWKKKK  VQKKACCWGC QSGH++K CPN+
Subjt:  -------------------SSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNK

TrEMBL top hitse value%identityAlignment
A0A6A2YS90 Transcription initiation factor IIA subunit 22.3e-2244.44Show/hide
Query:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--------------
        D+EKFD  INF LWQ+QVKD++IQS L+KALKG+P+   SE  +    P +   +  +S MS+E+WEE+D+RAAS IR  LAKN+L              
Subjt:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--------------

Query:  ------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVISSHEE
                          E+FH L +E+ TKIS H S LN I  +LE+I V+IDDED  L LI  +SS  E
Subjt:  ------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVISSHEE

A0A6A2ZYJ4 CCHC-type domain-containing protein1.2e-2334.09Show/hide
Query:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSE-------DASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL-------
        D+EKFD  INF LWQ+QVKD++IQ  L+K LKG+P+        D   +  G+ G         +S MS+E+WEE+D+RAAS IR  LAKN+L       
Subjt:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSE-------DASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL-------

Query:  -------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLM--------LILVI-------------------
                                 E+FH L +E+ TKIS H S LN I  +LE+I V+IDDE+  L+         +L+                    
Subjt:  -------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLM--------LILVI-------------------

Query:  -------SSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPN-KAGSSKGSSRMLTVF
                S E   L     +KK    +KK  CW C Q GH++K C N +A S+ GS   ++ F
Subjt:  -------SSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPN-KAGSSKGSSRMLTVF

A0A6A3B141 CCHC-type domain-containing protein3.3e-2940.71Show/hide
Query:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--EQFHTLWIEKCT
        D+EKFD  INF LWQ+QVKD++IQS L+KALKG+P+   SE  +    P +   +  +S MS+E+WEE+D+RAAS IR  LAKN+L  E+FH L +E+ T
Subjt:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--EQFHTLWIEKCT

Query:  KISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI---------------------------------------SSHEESALVASNWKKKKYFVQKKAC
        KIS H S LN I  +LE+I VKIDDED  L LI  +                                        S E  AL     +KK    ++K  
Subjt:  KISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI---------------------------------------SSHEESALVASNWKKKKYFVQKKAC

Query:  CWGCEQSGHIEKKCPNKAGSSKGSSR
        CWGC Q GH++  C N   +S   S+
Subjt:  CWGCEQSGHIEKKCPNKAGSSKGSSR

A0A6A3BK59 CCHC-type domain-containing protein6.7e-2242.47Show/hide
Query:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--------------
        D+EKFD  INF LWQ+QVKD++IQS L+KALKG+P+   SE  +    P +   +  +S MS+E+WEE+D+RAAS IR  LAKN+L              
Subjt:  DMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--------------

Query:  ------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI-SSHEESALVASNWKKKKYF
                          E+FH L +E+ TKIS H S LN I  +LE+I V+IDDED  L LI  + SS+E    V    K+   F
Subjt:  ------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI-SSHEESALVASNWKKKKYF

A0A6J1CG82 uncharacterized protein LOC1110105212.2e-5754.02Show/hide
Query:  MSFFMSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLR----SSMSDEDWEEMDLRAASAIRTSLAKNIL
        MSFFMSPV ID+EKFD MINF LWQ+QVKD++IQS LHKALKGRPSE ASE L  +GGP+E      R    SSMS EDWEEMDLRAASAIRTSLAKNIL
Subjt:  MSFFMSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLR----SSMSDEDWEEMDLRAASAIRTSLAKNIL

Query:  --------------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI--------------------
                                        EQFHTL +E+  KIS H SNLNSI F+LEAIEVKIDDED  L LIL +                    
Subjt:  --------------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVI--------------------

Query:  -------------------SSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNK
                           +SHE+SALV SNWKKKK  VQKKACCWGC QSGH++K CPN+
Subjt:  -------------------SSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-0524.85Show/hide
Query:  MSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--------
        MS V  ++ KF+    FS WQ +++D++IQ  LHK L      D+ +                  +M  EDW ++D RAASAIR  L+ +++        
Subjt:  MSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNIL--------

Query:  ------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLI
                                +Q + L + + T    H +  N +  +L  + VKI++ED  ++L+
Subjt:  ------------------------EQFHTLWIEKCTKISHHFSNLNSITFKLEAIEVKIDDEDMTLMLI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTCTTTATGAGTCCAGTAAACATTGACATGGAGAAATTTGACAAAATGATCAACTTCAGCTTGTGGCAAATGCAAGTCAAGGATATGATGATACAATCTAGGTT
ACACAAGGCATTAAAGGGAAGACCGAGTGAAGATGCTTCTGAAAATTTAAGGGGTAATGGTGGTCCAGTGGAGGTTCCAATAGAGGTTCTAAGAAGTTCAATGAGTGATG
AAGATTGGGAGGAAATGGATTTGAGGGCTGCAAGCGCGATACGAACAAGTTTGGCTAAGAATATTCTTGAGCAGTTTCACACGCTGTGGATTGAGAAATGTACGAAAATT
TCACATCATTTTAGTAATCTCAATAGCATCACCTTTAAGCTGGAGGCGATTGAAGTGAAGATAGATGACGAAGATATGACACTCATGCTTATCTTGGTCATATCTTCACA
TGAAGAATCAGCACTGGTGGCTAGCAATTGGAAGAAGAAGAAATACTTCGTGCAAAAGAAAGCTTGTTGTTGGGGATGCGAACAATCTGGGCACATAGAGAAAAAATGTC
CTAATAAAGCCGGTTCGTCAAAGGGCTCTAGTCGGATGTTGACAGTGTTTCTCTCTTCAGGGGAGACGATGATCAGTTCCTCTGAAGAGAGAAAGAATTCATCCTCATGG
TATGCCGACTTTACCATGATAGAGGATATGATGTTAGCGATTCCACAGATTTACACATGGACATTGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTCTTTATGAGTCCAGTAAACATTGACATGGAGAAATTTGACAAAATGATCAACTTCAGCTTGTGGCAAATGCAAGTCAAGGATATGATGATACAATCTAGGTT
ACACAAGGCATTAAAGGGAAGACCGAGTGAAGATGCTTCTGAAAATTTAAGGGGTAATGGTGGTCCAGTGGAGGTTCCAATAGAGGTTCTAAGAAGTTCAATGAGTGATG
AAGATTGGGAGGAAATGGATTTGAGGGCTGCAAGCGCGATACGAACAAGTTTGGCTAAGAATATTCTTGAGCAGTTTCACACGCTGTGGATTGAGAAATGTACGAAAATT
TCACATCATTTTAGTAATCTCAATAGCATCACCTTTAAGCTGGAGGCGATTGAAGTGAAGATAGATGACGAAGATATGACACTCATGCTTATCTTGGTCATATCTTCACA
TGAAGAATCAGCACTGGTGGCTAGCAATTGGAAGAAGAAGAAATACTTCGTGCAAAAGAAAGCTTGTTGTTGGGGATGCGAACAATCTGGGCACATAGAGAAAAAATGTC
CTAATAAAGCCGGTTCGTCAAAGGGCTCTAGTCGGATGTTGACAGTGTTTCTCTCTTCAGGGGAGACGATGATCAGTTCCTCTGAAGAGAGAAAGAATTCATCCTCATGG
TATGCCGACTTTACCATGATAGAGGATATGATGTTAGCGATTCCACAGATTTACACATGGACATTGGCTTGA
Protein sequenceShow/hide protein sequence
MSFFMSPVNIDMEKFDKMINFSLWQMQVKDMMIQSRLHKALKGRPSEDASENLRGNGGPVEVPIEVLRSSMSDEDWEEMDLRAASAIRTSLAKNILEQFHTLWIEKCTKI
SHHFSNLNSITFKLEAIEVKIDDEDMTLMLILVISSHEESALVASNWKKKKYFVQKKACCWGCEQSGHIEKKCPNKAGSSKGSSRMLTVFLSSGETMISSSEERKNSSSW
YADFTMIEDMMLAIPQIYTWTLA