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Moc04g28600 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g28600
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr4:21222156..21223388
RNA-Seq ExpressionMoc04g28600
SyntenyMoc04g28600
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH01244.1 Ribonuclease H-like superfamily protein [Prunus dulcis]1.4e-1326.32Show/hide
Query:  MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFKLPYSHLPDADFMAGISTFGR------------
        M+ ++LK  YFP  + L      ++SY+W+S +WG +LL  GL  R   G  T  + D W+PR ++F+     + D +  AG     R            
Subjt:  MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFKLPYSHLPDADFMAGISTFGR------------

Query:  ----------------------IIESH-----------------------------------WSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQIL
                              ++E H                                   WSPPPI   K NVDAA        GIG V RNDKG+++
Subjt:  ----------------------IIESH-----------------------------------WSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQIL

Query:  AS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLIN
        A+      T   P +AE +AL   +  A       +  EFDS  ++N
Subjt:  AS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLIN

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]1.4e-2673.12Show/hide
Query:  GWIKFNVDAACKKPQFRTGIGIVGRNDKGQILAS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPDSCCGSDV
        GWIK NVD ACKK QFRT IGIV RN+KGQILA+       YHDPL AESLALLE L LAD LNI++VQFE DSLQLINLLTE+P S CGS+V
Subjt:  GWIKFNVDAACKKPQFRTGIGIVGRNDKGQILAS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPDSCCGSDV

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]3.8e-1966.67Show/hide
Query:  LPDADFMAGISTFGRIIESHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILASTYHDPLNAESLALLE
        L D       S+  R IE++WSPPP GWIK NVDAACKK QFRTGIGIV RN+KGQILA+  HDPL AESLAL +
Subjt:  LPDADFMAGISTFGRIIESHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILASTYHDPLNAESLALLE

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]1.1e-1343.62Show/hide
Query:  SHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILAS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPD
        ++W+PP   W+K NVD ACK    RTGIG+V +NDKG+I+ +       +++PL  E+LA+LE L+L   L++  VQ + DS   INL+++E D
Subjt:  SHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILAS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPD

XP_037451095.1 uncharacterized protein LOC119321571 [Triticum dicoccoides]1.1e-1330.85Show/hide
Query:  SRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFKLPYSHLPDADFMAGISTFGRIIES----------
        +R+LK  YFP  SIL  T  S  S +W+SIV GRD++ +GL  RI  G +T  +   W+PR    +   + +PD   +        + E           
Subjt:  SRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFKLPYSHLPDADFMAGISTFGRIIES----------

Query:  -------HWSPPPIGWIKFNVDAACKKPQFRTGIG---IVGRNDKGQILAST------YHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTE
                W P      K NVDAA     FR G+G    V RN+ GQ L S+        DP   E++A  E L LA+ L ++K+    D  +++  + E
Subjt:  -------HWSPPPIGWIKFNVDAACKKPQFRTGIG---IVGRNDKGQILAST------YHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTE

Query:  E
        +
Subjt:  E

TrEMBL top hitse value%identityAlignment
A0A4Y1RAL7 Ribonuclease H-like superfamily protein6.7e-1426.32Show/hide
Query:  MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFKLPYSHLPDADFMAGISTFGR------------
        M+ ++LK  YFP  + L      ++SY+W+S +WG +LL  GL  R   G  T  + D W+PR ++F+     + D +  AG     R            
Subjt:  MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFKLPYSHLPDADFMAGISTFGR------------

Query:  ----------------------IIESH-----------------------------------WSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQIL
                              ++E H                                   WSPPPI   K NVDAA        GIG V RNDKG+++
Subjt:  ----------------------IIESH-----------------------------------WSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQIL

Query:  AS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLIN
        A+      T   P +AE +AL   +  A       +  EFDS  ++N
Subjt:  AS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLIN

A0A6J1CNR4 uncharacterized protein LOC1110129506.9e-2773.12Show/hide
Query:  GWIKFNVDAACKKPQFRTGIGIVGRNDKGQILAS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPDSCCGSDV
        GWIK NVD ACKK QFRT IGIV RN+KGQILA+       YHDPL AESLALLE L LAD LNI++VQFE DSLQLINLLTE+P S CGS+V
Subjt:  GWIKFNVDAACKKPQFRTGIGIVGRNDKGQILAS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPDSCCGSDV

A0A6J1CTE3 uncharacterized protein LOC1110145781.8e-1966.67Show/hide
Query:  LPDADFMAGISTFGRIIESHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILASTYHDPLNAESLALLE
        L D       S+  R IE++WSPPP GWIK NVDAACKK QFRTGIGIV RN+KGQILA+  HDPL AESLAL +
Subjt:  LPDADFMAGISTFGRIIESHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILASTYHDPLNAESLALLE

A0A6J1DJL6 uncharacterized protein LOC1110217115.2e-1443.62Show/hide
Query:  SHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILAS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPD
        ++W+PP   W+K NVD ACK    RTGIG+V +NDKG+I+ +       +++PL  E+LA+LE L+L   L++  VQ + DS   INL+++E D
Subjt:  SHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILAS------TYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPD

A0A803QH29 Uncharacterized protein3.0e-1436.23Show/hide
Query:  RLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFK---------LPYSHLPDADFMAGISTFGRIIESHW
        RLLK  Y+  +S L      S S  W+ I WGR+LL KGL  +ID G       D W+P    F+         LP +H     F    S +    E  W
Subjt:  RLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFK---------LPYSHLPDADFMAGISTFGRIIESHW

Query:  SPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILA
         PP    +K NVDAA      + GIG V RN+KG+++A
Subjt:  SPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQILA

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003101.4e-0840Show/hide
Query:  MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRES
        ++SRLL+  YFP  S++  +  +  SY W+SI+ GR+LL++GL   I  G+ T  + DRW+  E+
Subjt:  MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRES

Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0732.29Show/hide
Query:  RIIESHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQIL------ASTYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEE
        R +   W  PP  W+K N DA  +    R GIG + RN+ G +L           + L AE  AL   +    R N +++ FE D+  L+NLL  +
Subjt:  RIIESHWSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQIL------ASTYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEE

AT3G25270.1 Ribonuclease H-like superfamily protein8.7e-0634.44Show/hide
Query:  WSPPPIGWIKFNVDAACKKPQFRTGIGIVGRND------KGQILASTYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEE
        W  PP  WIK+N D A          G + R++       GQ + ST  D L +E  AL+  +  A     RKV FE DS Q+  L+  E
Subjt:  WSPPPIGWIKFNVDAACKKPQFRTGIGIVGRND------KGQILASTYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEE

AT4G29090.1 Ribonuclease H-like superfamily protein1.3e-0634.44Show/hide
Query:  WSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQI------LASTYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEE
        W PPP  W+K N DA   +   R GIG V RN+KG++              L AE  A+   +    R     V FE DS  LI +L  +
Subjt:  WSPPPIGWIKFNVDAACKKPQFRTGIGIVGRNDKGQI------LASTYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEE

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.9e-1040Show/hide
Query:  MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRES
        ++SRLL+  YFP  S++  +  +  SY W+SI+ GR+LL++GL   I  G+ T  + DRW+  E+
Subjt:  MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCAAGGTTACTAAAGGATTGCTATTTCCCCGAGGATTCAATTCTCACCCCTACAACTAGTTCTTCAAATTCCTATCTTTGGAAAAGTATTGTTTGGGGTCGTGA
TTTGCTCGCCAAAGGCCTTTGGATAAGAATTGACAAGGGTCTTTCAACAAATTTCTTTAAGGATAGGTGGGTACCTCGTGAAAGCACTTTCAAACTGCCTTATTCGCACT
TACCCGATGCAGATTTTATGGCGGGTATCAGTACTTTTGGTCGGATTATTGAGAGTCACTGGTCACCTCCCCCGATAGGTTGGATAAAATTTAACGTGGATGCAGCTTGT
AAGAAGCCTCAATTTAGAACAGGAATAGGTATTGTCGGCAGAAATGACAAGGGACAAATTTTGGCATCGACTTACCATGATCCATTGAATGCAGAATCTCTTGCCCTCCT
TGAAGACCTCTATTTGGCTGACCGTTTGAATATCCGAAAAGTACAGTTTGAATTTGATTCTTTGCAATTGATCAATCTACTCACCGAGGAACCCGATTCCTGTTGCGGTT
CTGACGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCAAGGTTACTAAAGGATTGCTATTTCCCCGAGGATTCAATTCTCACCCCTACAACTAGTTCTTCAAATTCCTATCTTTGGAAAAGTATTGTTTGGGGTCGTGA
TTTGCTCGCCAAAGGCCTTTGGATAAGAATTGACAAGGGTCTTTCAACAAATTTCTTTAAGGATAGGTGGGTACCTCGTGAAAGCACTTTCAAACTGCCTTATTCGCACT
TACCCGATGCAGATTTTATGGCGGGTATCAGTACTTTTGGTCGGATTATTGAGAGTCACTGGTCACCTCCCCCGATAGGTTGGATAAAATTTAACGTGGATGCAGCTTGT
AAGAAGCCTCAATTTAGAACAGGAATAGGTATTGTCGGCAGAAATGACAAGGGACAAATTTTGGCATCGACTTACCATGATCCATTGAATGCAGAATCTCTTGCCCTCCT
TGAAGACCTCTATTTGGCTGACCGTTTGAATATCCGAAAAGTACAGTTTGAATTTGATTCTTTGCAATTGATCAATCTACTCACCGAGGAACCCGATTCCTGTTGCGGTT
CTGACGTTTAG
Protein sequenceShow/hide protein sequence
MVSRLLKDCYFPEDSILTPTTSSSNSYLWKSIVWGRDLLAKGLWIRIDKGLSTNFFKDRWVPRESTFKLPYSHLPDADFMAGISTFGRIIESHWSPPPIGWIKFNVDAAC
KKPQFRTGIGIVGRNDKGQILASTYHDPLNAESLALLEDLYLADRLNIRKVQFEFDSLQLINLLTEEPDSCCGSDV