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Moc04g29040 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g29040
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:21524593..21527687
RNA-Seq ExpressionMoc04g29040
SyntenyMoc04g29040
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152110.1 uncharacterized protein LOC111019899 [Momordica charantia]8.8e-7550Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------
        MEKLLKRPEKLRG PE+R+KDKYCRFHR HGHNT+  WELK QIEDLIQDGYFKKFVGKP                                        
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------

Query:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS
                                                                                        RSQLK+SPTPL GFSGESV 
Subjt:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS

Query:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ
        PEGCIDLP+T+GQD T+VTQMAEFVV+DGRSAYNAIFGRP+IHSFRA+PSTLHQVLKYSTPNG+GTV+GEQ  S+ECYAS LKG++VCALE   +     
Subjt:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ

Query:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIG
        E EADLP    ++F+ P EELELVPLLS EKQV +G
Subjt:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIG

XP_022152367.1 uncharacterized protein LOC111020111 [Momordica charantia]5.3e-8055.77Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------
        MEKLLKRPEKL+GD EKRNKDKYCRF R HGHNT+ CWELKRQIEDLI+DGYFKKFVGKP                                        
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------

Query:  -----------------------------------------------------------RSQLKRSPTPLAGFSGESVSPEGCIDLPITIGQDNTQVTQM
                                                                   RSQLK+SPTPL GFSGESVSPEGCIDLP+T+GQD TQVTQM
Subjt:  -----------------------------------------------------------RSQLKRSPTPLAGFSGESVSPEGCIDLPITIGQDNTQVTQM

Query:  AEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEEL
        AEFVVIDGR AYNAIFGRP+IHSFRAVPSTLHQVLKYSTPNG+GTV+GEQKTS+ECYAS LKGS+VC LE QAN       + D P+EGK+QFSP  EEL
Subjt:  AEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEEL

Query:  ELVPLLSPEKQV
        ELVPLLSP + +
Subjt:  ELVPLLSPEKQV

XP_022154846.1 uncharacterized protein LOC111022006 [Momordica charantia]2.7e-9254.59Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------
        MEKLLKRPEKLRGDPEK NKD               CWELKRQIE+LIQDGYFKKFVGKP                                        
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------

Query:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS
                                                                                        RSQLK+SPTPL GFSGESVS
Subjt:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS

Query:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ
        PEGCIDL +TIGQD TQVTQMAEFVVID +SAYNAIFGRP+IHSF AV STLHQVLKYST NG+GTV+GEQKTS++CYAS LKG AVC LE Q N GKLQ
Subjt:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ

Query:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIGTKLGATDREELINFLRSNSDIFAWSHEDMPGIDP
         SEADLPK+ K+QFSPP EELELVPLLSPEK V+IGTKL ATDR+ELINFLRSNSD+FAWSHEDMPGIDP
Subjt:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIGTKLGATDREELINFLRSNSDIFAWSHEDMPGIDP

XP_022155866.1 uncharacterized protein LOC111022880 [Momordica charantia]5.7e-7450Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------
        MEKLLKRPEKLRG PE+R+KDKYCRFHR HGHNT+ CWELKRQIEDLIQDGYFKKFVGKP                                        
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------

Query:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS
                                                                                        RSQL+RSPTPL GFSGESV 
Subjt:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS

Query:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ
        PEGCIDLP+T+GQ+ T++TQMAEFVV+DGRS YNAIFGRP+IHSFRA+PSTLHQVLKY TPNG+GTV+GEQ  S+ECYA+ALKG +VCALE     G L 
Subjt:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ

Query:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVS
        E EA+LP   +K+F+ P EELELVPLLSPEKQ++
Subjt:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVS

XP_022158414.1 uncharacterized protein LOC111024904 [Momordica charantia]2.7e-8461.56Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKPRS-------QLKRSPT-----------------PLAGFSG
        MEKLLKRPEKLRGD EKRNK+KYCRFHR HGHNTT CWELKRQIEDLIQDGYFKKFVGKPRS       + KRS T                 P  G SG
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKPRS-------QLKRSPT-----------------PLAGFSG

Query:  ES--------------------------------------------------------VSPEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRP
                                                                  +   GCIDLP+TIGQD TQVTQMAEFVVIDGRSAYNAIFGRP
Subjt:  ES--------------------------------------------------------VSPEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRP

Query:  VIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEELELVPLLSPEKQVS
        +IHSFRAVPSTLHQVLKYSTPN +G V+GEQKTS+ECYASALKGSAVCALE Q N GKLQESEADLPKEGK+QF PP EELELVPLLSPE+Q +
Subjt:  VIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEELELVPLLSPEKQVS

TrEMBL top hitse value%identityAlignment
A0A6J1DD03 uncharacterized protein LOC1110198994.3e-7550Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------
        MEKLLKRPEKLRG PE+R+KDKYCRFHR HGHNT+  WELK QIEDLIQDGYFKKFVGKP                                        
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------

Query:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS
                                                                                        RSQLK+SPTPL GFSGESV 
Subjt:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS

Query:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ
        PEGCIDLP+T+GQD T+VTQMAEFVV+DGRSAYNAIFGRP+IHSFRA+PSTLHQVLKYSTPNG+GTV+GEQ  S+ECYAS LKG++VCALE   +     
Subjt:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ

Query:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIG
        E EADLP    ++F+ P EELELVPLLS EKQV +G
Subjt:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIG

A0A6J1DG07 uncharacterized protein LOC1110201112.6e-8055.77Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------
        MEKLLKRPEKL+GD EKRNKDKYCRF R HGHNT+ CWELKRQIEDLI+DGYFKKFVGKP                                        
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------

Query:  -----------------------------------------------------------RSQLKRSPTPLAGFSGESVSPEGCIDLPITIGQDNTQVTQM
                                                                   RSQLK+SPTPL GFSGESVSPEGCIDLP+T+GQD TQVTQM
Subjt:  -----------------------------------------------------------RSQLKRSPTPLAGFSGESVSPEGCIDLPITIGQDNTQVTQM

Query:  AEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEEL
        AEFVVIDGR AYNAIFGRP+IHSFRAVPSTLHQVLKYSTPNG+GTV+GEQKTS+ECYAS LKGS+VC LE QAN       + D P+EGK+QFSP  EEL
Subjt:  AEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEEL

Query:  ELVPLLSPEKQV
        ELVPLLSP + +
Subjt:  ELVPLLSPEKQV

A0A6J1DPX9 uncharacterized protein LOC1110220061.3e-9254.59Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------
        MEKLLKRPEKLRGDPEK NKD               CWELKRQIE+LIQDGYFKKFVGKP                                        
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------

Query:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS
                                                                                        RSQLK+SPTPL GFSGESVS
Subjt:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS

Query:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ
        PEGCIDL +TIGQD TQVTQMAEFVVID +SAYNAIFGRP+IHSF AV STLHQVLKYST NG+GTV+GEQKTS++CYAS LKG AVC LE Q N GKLQ
Subjt:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ

Query:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIGTKLGATDREELINFLRSNSDIFAWSHEDMPGIDP
         SEADLPK+ K+QFSPP EELELVPLLSPEK V+IGTKL ATDR+ELINFLRSNSD+FAWSHEDMPGIDP
Subjt:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIGTKLGATDREELINFLRSNSDIFAWSHEDMPGIDP

A0A6J1DT04 uncharacterized protein LOC1110228802.8e-7450Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------
        MEKLLKRPEKLRG PE+R+KDKYCRFHR HGHNT+ CWELKRQIEDLIQDGYFKKFVGKP                                        
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKP----------------------------------------

Query:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS
                                                                                        RSQL+RSPTPL GFSGESV 
Subjt:  --------------------------------------------------------------------------------RSQLKRSPTPLAGFSGESVS

Query:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ
        PEGCIDLP+T+GQ+ T++TQMAEFVV+DGRS YNAIFGRP+IHSFRA+PSTLHQVLKY TPNG+GTV+GEQ  S+ECYA+ALKG +VCALE     G L 
Subjt:  PEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQ

Query:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVS
        E EA+LP   +K+F+ P EELELVPLLSPEKQ++
Subjt:  ESEADLPKEGKKQFSPPAEELELVPLLSPEKQVS

A0A6J1DZB9 uncharacterized protein LOC1110249041.3e-8461.56Show/hide
Query:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKPRS-------QLKRSPT-----------------PLAGFSG
        MEKLLKRPEKLRGD EKRNK+KYCRFHR HGHNTT CWELKRQIEDLIQDGYFKKFVGKPRS       + KRS T                 P  G SG
Subjt:  MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKPRS-------QLKRSPT-----------------PLAGFSG

Query:  ES--------------------------------------------------------VSPEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRP
                                                                  +   GCIDLP+TIGQD TQVTQMAEFVVIDGRSAYNAIFGRP
Subjt:  ES--------------------------------------------------------VSPEGCIDLPITIGQDNTQVTQMAEFVVIDGRSAYNAIFGRP

Query:  VIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEELELVPLLSPEKQVS
        +IHSFRAVPSTLHQVLKYSTPN +G V+GEQKTS+ECYASALKGSAVCALE Q N GKLQESEADLPKEGK+QF PP EELELVPLLSPE+Q +
Subjt:  VIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEELELVPLLSPEKQVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGCTCCTCAAGCGACCTGAGAAGCTCCGAGGAGACCCAGAAAAACGCAACAAAGATAAGTATTGTCGTTTTCATCGCAGTCACGGCCACAATACGACATGTTG
CTGGGAGTTGAAGCGCCAGATTGAAGACCTCATTCAAGACGGCTACTTCAAAAAATTCGTGGGCAAACCGAGGTCACAATTGAAGAGGAGTCCAACACCCTTGGCTGGAT
TCTCTGGAGAATCGGTCTCGCCTGAAGGGTGCATCGACCTGCCGATAACTATCGGGCAAGATAATACCCAAGTAACGCAGATGGCCGAGTTCGTGGTGATCGACGGCAGA
TCGGCCTATAACGCCATTTTCGGGAGACCAGTCATCCACTCATTTCGGGCCGTCCCCTCCACACTGCACCAAGTCTTGAAGTACTCAACCCCGAATGGGATGGGCACGGT
TCAAGGTGAGCAAAAAACCTCACAGGAGTGTTATGCATCCGCGCTCAAGGGGTCGGCGGTATGCGCCCTGGAAGGACAAGCCAATCATGGCAAGTTGCAGGAATCAGAGG
CCGACTTGCCAAAGGAAGGCAAAAAGCAGTTCTCCCCCCCAGCAGAAGAGCTCGAGCTTGTTCCTTTACTTAGCCCTGAAAAACAAGTAAGTATAGGAACTAAGCTGGGG
GCAACTGACAGGGAAGAACTGATCAACTTCCTCAGGTCTAACTCGGACATCTTCGCATGGTCTCACGAGGACATGCCTGGTATCGACCCAAAGATCATGATCGGTCCCGG
TCGAAATCATGGACACTCCTTCAGTCTTGGAGCCAGATGTAATGGAGGTCGATACCCCGTCACTTACTTGGATGGACCCAATCGTGGAGTTCATCAAAGGAAACCCACCG
CAAGATCCGAAGGAGCAAAAGAAGATGGCGCGAAGAGCAGCTCGGTTCACACTCCGAGAAGGAATGTTGTACCGACGCGGCTTCTCCCTGCCTCTCCTCAAGTGTGTGAC
TCCCGAAGAAGGCCTTTACATTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGCTCCTCAAGCGACCTGAGAAGCTCCGAGGAGACCCAGAAAAACGCAACAAAGATAAGTATTGTCGTTTTCATCGCAGTCACGGCCACAATACGACATGTTG
CTGGGAGTTGAAGCGCCAGATTGAAGACCTCATTCAAGACGGCTACTTCAAAAAATTCGTGGGCAAACCGAGGTCACAATTGAAGAGGAGTCCAACACCCTTGGCTGGAT
TCTCTGGAGAATCGGTCTCGCCTGAAGGGTGCATCGACCTGCCGATAACTATCGGGCAAGATAATACCCAAGTAACGCAGATGGCCGAGTTCGTGGTGATCGACGGCAGA
TCGGCCTATAACGCCATTTTCGGGAGACCAGTCATCCACTCATTTCGGGCCGTCCCCTCCACACTGCACCAAGTCTTGAAGTACTCAACCCCGAATGGGATGGGCACGGT
TCAAGGTGAGCAAAAAACCTCACAGGAGTGTTATGCATCCGCGCTCAAGGGGTCGGCGGTATGCGCCCTGGAAGGACAAGCCAATCATGGCAAGTTGCAGGAATCAGAGG
CCGACTTGCCAAAGGAAGGCAAAAAGCAGTTCTCCCCCCCAGCAGAAGAGCTCGAGCTTGTTCCTTTACTTAGCCCTGAAAAACAAGTAAGTATAGGAACTAAGCTGGGG
GCAACTGACAGGGAAGAACTGATCAACTTCCTCAGGTCTAACTCGGACATCTTCGCATGGTCTCACGAGGACATGCCTGGTATCGACCCAAAGATCATGATCGGTCCCGG
TCGAAATCATGGACACTCCTTCAGTCTTGGAGCCAGATGTAATGGAGGTCGATACCCCGTCACTTACTTGGATGGACCCAATCGTGGAGTTCATCAAAGGAAACCCACCG
CAAGATCCGAAGGAGCAAAAGAAGATGGCGCGAAGAGCAGCTCGGTTCACACTCCGAGAAGGAATGTTGTACCGACGCGGCTTCTCCCTGCCTCTCCTCAAGTGTGTGAC
TCCCGAAGAAGGCCTTTACATTCTTAG
Protein sequenceShow/hide protein sequence
MEKLLKRPEKLRGDPEKRNKDKYCRFHRSHGHNTTCCWELKRQIEDLIQDGYFKKFVGKPRSQLKRSPTPLAGFSGESVSPEGCIDLPITIGQDNTQVTQMAEFVVIDGR
SAYNAIFGRPVIHSFRAVPSTLHQVLKYSTPNGMGTVQGEQKTSQECYASALKGSAVCALEGQANHGKLQESEADLPKEGKKQFSPPAEELELVPLLSPEKQVSIGTKLG
ATDREELINFLRSNSDIFAWSHEDMPGIDPKIMIGPGRNHGHSFSLGARCNGGRYPVTYLDGPNRGVHQRKPTARSEGAKEDGAKSSSVHTPRRNVVPTRLLPASPQVCD
SRRRPLHS