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Moc04g29740 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g29740
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description40S ribosomal protein S27
Genome locationchr4:22095710..22097317
RNA-Seq ExpressionMoc04g29740
SyntenyMoc04g29740
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0009536 - plastid (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABK96570.1 unknown [Populus trichocarpa x Populus deltoides]1.7e-1785.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI + +S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

BBG93786.1 ribosomal protein S27 [Prunus dulcis]1.8e-1965.52Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPS-----------------YASQLEGVPDSPRGVLSGERAID
        MVLQNDIDLL+PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +                   S L GVP SPR  LSG R  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPS-----------------YASQLEGVPDSPRGVLSGERAID

CAG1853313.1 unnamed protein product [Musa acuminata subsp. malaccensis]1.1e-2158.65Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI-----------------PSYASQLEGVPDSPRGVLSGERAIDDDEVSLFCFIEKK
        MVL NDIDLLNPPAELEKR+HKLKRLVQSPNSFFMDVKCQGCFNI                 P  AS+L GV  SPR  LS E+AI+      F  ++K 
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI-----------------PSYASQLEGVPDSPRGVLSGERAIDDDEVSLFCFIEKK

Query:  MKSL
        ++SL
Subjt:  MKSL

NP_001236263.1 40S ribosomal protein S27-2-like [Glycine max]3.7e-1785.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

QCE05464.1 small subunit ribosomal protein S27e [Vigna unguiculata]3.7e-1785.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

TrEMBL top hitse value%identityAlignment
A0A1S3UP09 40S ribosomal protein S271.8e-1785.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

A0A4Y1QPM0 Ribosomal protein S278.7e-2065.52Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPS-----------------YASQLEGVPDSPRGVLSGERAID
        MVLQNDIDLL+PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +                   S L GVP SPR  LSG R  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPS-----------------YASQLEGVPDSPRGVLSGERAID

A0A6J1JTM3 40S ribosomal protein S271.8e-1785.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

A9PJL7 Uncharacterized protein8.1e-1885.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI + +S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

M0RHJ7 Uncharacterized protein5.4e-2258.65Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI-----------------PSYASQLEGVPDSPRGVLSGERAIDDDEVSLFCFIEKK
        MVL NDIDLLNPPAELEKR+HKLKRLVQSPNSFFMDVKCQGCFNI                 P  AS+L GV  SPR  LS E+AI+      F  ++K 
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI-----------------PSYASQLEGVPDSPRGVLSGERAIDDDEVSLFCFIEKK

Query:  MKSL
        ++SL
Subjt:  MKSL

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-14.9e-2085.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

P47903 40S ribosomal protein S271.7e-1778.18Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

Q8L953 40S ribosomal protein S27-37.1e-1981.82Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

Q96564 40S ribosomal protein S271.2e-1877.97Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGVPDSP
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNI +  S  + V   P
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGVPDSP

Q9M2F1 40S ribosomal protein S27-24.9e-2085.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein3.5e-2185.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

AT3G61110.1 ribosomal protein S273.5e-2185.45Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

AT3G61111.1 Zinc-binding ribosomal protein family protein1.5e-1672.73Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV

AT5G47930.1 Zinc-binding ribosomal protein family protein5.0e-2081.82Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI +  S  + V
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTTGAGAAGAGGAAGCACAAGCTCAAGCGTCTGGTGCAATCACCCAACTCGTTCTTCATG
GATGTTAAATGCCAGGGATGCTTCAACATACCGTCTTATGCCAGCCAACTGGAGGGCGTGCCAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGCGATTGAT
GATGATGAGGTCTCCTTGTTTTGTTTTATTGAGAAGAAAATGAAGTCGCTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTTCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTTGAGAAGAGGAAGCACAAGCTCAAGCGTCTGGTGCAATCACCCAACTCGTTCTTCATG
GATGTTAAATGCCAGGGATGCTTCAACATACCGTCTTATGCCAGCCAACTGGAGGGCGTGCCAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGCGATTGAT
GATGATGAGGTCTCCTTGTTTTGTTTTATTGAGAAGAAAATGAAGTCGCTGTTTTGA
Protein sequenceShow/hide protein sequence
MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNIPSYASQLEGVPDSPRGVLSGERAIDDDEVSLFCFIEKKMKSLF