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Moc04g29840 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g29840
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTranscription initiation factor TFIID subunit 11 isoform X3
Genome locationchr4:22210260..22211453
RNA-Seq ExpressionMoc04g29840
SyntenyMoc04g29840
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]2.1e-6881.58Show/hide
Query:  GSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLA
        GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPS    +SD  S+PP IENL VDGESQSILGDDLA
Subjt:  GSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLA

Query:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD-------DDGDDESSSSDEDADDRRKERRKKKA
         RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD       DD D+E  SSDED DDR+KERRKKKA
Subjt:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD-------DDGDDESSSSDEDADDRRKERRKKKA

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-6982.89Show/hide
Query:  GSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLA
        GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPS    +SD  S+PP IENL VDGESQSILGDDLA
Subjt:  GSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLA

Query:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
         RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

XP_022141565.1 uncharacterized protein LOC111011897 [Momordica charantia]8.2e-89100Show/hide
Query:  KKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLA
        KKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLA
Subjt:  KKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLA

Query:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKAA
        TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKAA
Subjt:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKAA

XP_022939254.1 nucleolin [Cucurbita moschata]1.4e-6784.15Show/hide
Query:  SGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLAT
        SGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS    +SD  S+PP IENL VDGESQSILGDDLA 
Subjt:  SGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLAT

Query:  RFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA
        RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD+D DDE  +SSDED DDR+KERRKKKA
Subjt:  RFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA

XP_023550367.1 nucleolin [Cucurbita pepo subsp. pepo]2.6e-6681.82Show/hide
Query:  GSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLA
        GSGN+DEQVEQLLQAAQDDLMLK ++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS    +SD  S+PP IENL VDGESQSILGDDLA
Subjt:  GSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLA

Query:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
         RFAALKASLPSS  PPPSS+ NDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

TrEMBL top hitse value%identityAlignment
A0A1S4E6L5 uncharacterized protein LOC1035028668.3e-6378.95Show/hide
Query:  KKAGGSGNDD--EQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSK-PPAIENLPVDGESQS
        +K  G GNDD  EQ+EQLLQAAQDDL+LKLTLDSHMSRVSPNYL SDLDRRFQALRSRPSS AAA PRNPR S    +SD  S+ PP IENL VDGESQS
Subjt:  KKAGGSGNDD--EQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSK-PPAIENLPVDGESQS

Query:  ILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        ILGDDLA RFAALKASLPSST PP SS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPS++DD+  ++E  SSDED +DR KERRKKKA
Subjt:  ILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X34.9e-6379.47Show/hide
Query:  KKAGGSGNDD--EQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSK-PPAIENLPVDGESQS
        +K  G GNDD  EQ+EQLLQAAQDDLMLKLTLDSHMSRVSPNYL SDLDRRFQALRSRPSS AAA PRNPR S    +SD  S+ PP IENL VDGESQS
Subjt:  KKAGGSGNDD--EQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSK-PPAIENLPVDGESQS

Query:  ILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        ILGDDLA RFAALKASLPSST PP SS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPS++DD+  ++E  SSDED +DR KERRKKKA
Subjt:  ILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

A0A6J1CIG2 uncharacterized protein LOC1110118974.0e-89100Show/hide
Query:  KKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLA
        KKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLA
Subjt:  KKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLA

Query:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKAA
        TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKAA
Subjt:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKAA

A0A6J1FGM0 nucleolin6.6e-6884.15Show/hide
Query:  SGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLAT
        SGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS    +SD  S+PP IENL VDGESQSILGDDLA 
Subjt:  SGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLAT

Query:  RFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA
        RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD+D DDE  +SSDED DDR+KERRKKKA
Subjt:  RFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA

A0A6J1JTW4 glucosidase 2 subunit beta4.7e-6681.28Show/hide
Query:  GSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLA
        GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAA   RNPR S    +SD  S+PP IENL VDGESQSILGDDLA
Subjt:  GSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQSILGDDLA

Query:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
         RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDA RLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  TRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24370.1 unknown protein4.6e-2143.45Show/hide
Query:  GNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLATRFAAL
        G ++++VEQLLQAAQD+++LKL++DSH SR S +YLD DL  RF AL+S+         +  RP     P     +E  P          +DL  RFAAL
Subjt:  GNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLATRFAAL

Query:  KASLPSSTPPPPSSMPNDV----DSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDD---DGDDESSSS
        K SLPS++      + +++    D   E+ EV+KLIQWA DAARLDPSP SD +     D DDE+ S+
Subjt:  KASLPSSTPPPPSSMPNDV----DSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDD---DGDDESSSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAGATGACTATTCCCTTCATTGAGATTGGAATAAAGAAGGCTGGGGGAAGCGGCAACGACGACGAACAAGTGGAGCAATTGCTGCAAGCTGCTCAGGAC
GATCTCATGCTCAAATTGACTCTCGATTCCCACATGTCTCGCGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTCAGATCGCGTCCT
TCCTCCGCCGCCGCCGCCGCTCCACGCAATCCACGGCCTTCTCGATCGGATTTGCCGTCGAAGCCACCGGCGATTGAAAATCTTCCTGTCGATGGCGAATCTCAG
TCGATTCTCGGTGACGATCTCGCTACTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACTCCTCCGCCTCCGTCGTCGATGCCTAACGACGTTGATAGC
GAGGATGAAGAGGATGAGGTCGAGAAGTTGATTCAGTGGGCCAAGGATGCTGCTCGGCTCGATCCTTCACCGCCATCTGATCAAGACGACGACGACGGCGACGAC
GAGTCTAGTAGTTCCGATGAAGATGCCGACGATCGGAGGAAAGAACGTCGGAAAAAGAAGGCGGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAGATGACTATTCCCTTCATTGAGATTGGAATAAAGAAGGCTGGGGGAAGCGGCAACGACGACGAACAAGTGGAGCAATTGCTGCAAGCTGCTCAGGAC
GATCTCATGCTCAAATTGACTCTCGATTCCCACATGTCTCGCGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTCAGATCGCGTCCT
TCCTCCGCCGCCGCCGCCGCTCCACGCAATCCACGGCCTTCTCGATCGGATTTGCCGTCGAAGCCACCGGCGATTGAAAATCTTCCTGTCGATGGCGAATCTCAG
TCGATTCTCGGTGACGATCTCGCTACTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACTCCTCCGCCTCCGTCGTCGATGCCTAACGACGTTGATAGC
GAGGATGAAGAGGATGAGGTCGAGAAGTTGATTCAGTGGGCCAAGGATGCTGCTCGGCTCGATCCTTCACCGCCATCTGATCAAGACGACGACGACGGCGACGAC
GAGTCTAGTAGTTCCGATGAAGATGCCGACGATCGGAGGAAAGAACGTCGGAAAAAGAAGGCGGCGTGA
Protein sequenceShow/hide protein sequence
MVKMTIPFIEIGIKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQ
SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKAA