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Moc04g32300 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g32300
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr4:24299254..24300664
RNA-Seq ExpressionMoc04g32300
SyntenyMoc04g32300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065356.1 hypothetical protein E6C27_scaffold17G00040 [Cucumis melo var. makuwa]5.0e-0534.65Show/hide
Query:  DRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTT
        D +FF      D+W  +L  M +    S   G+ G +LS I     GK  RR++WR+ W +T+ FIW ERN R+H  G  R P+V+   +   +  R  +
Subjt:  DRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTT

Query:  W
        W
Subjt:  W

XP_022158199.1 uncharacterized protein LOC111024737 [Momordica charantia]1.2e-1461.43Show/hide
Query:  SDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTTWLGSC
        ++L+ IC   AG S+RR VWRLAWTSTVS +W ERN R+H  G GR  SV+L  +KA+VY+RCTTW GSC
Subjt:  SDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTTWLGSC

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]3.5e-0643.9Show/hide
Query:  LWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKV
        +W G++   G++   S       ++L+ IC    G S+RR VWRLAWT TVS +W E N R+H  G GRS SV+L  +KA+V
Subjt:  LWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKV

XP_031745517.1 uncharacterized protein LOC116405878 [Cucumis sativus]7.7e-0634.65Show/hide
Query:  DRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTT
        D +FF     +++W  +LL   +    S   G  G +LS I     GKS RR++WRL W +T+ FIW ERN R+H   + R P V+   +++ +  R  +
Subjt:  DRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTT

Query:  W
        W
Subjt:  W

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]2.0e-0635.64Show/hide
Query:  DRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTT
        D +FF     +++W  +LL M +    S   G  G  LS I     GKS RR++WRL W +T+ FIW ERN R+H   + R P V+   +++ +  R  +
Subjt:  DRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTT

Query:  W
        W
Subjt:  W

TrEMBL top hitse value%identityAlignment
A0A5A7V2L9 Putative reverse transcriptase7.1e-0536.67Show/hide
Query:  DLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTTW
        D+W  +L  M +    S   G  G +LS IC    GK  RR++WR+ W +T+ +IW ERN R+H  G  R P VI   +   +  R  +W
Subjt:  DLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTTW

A0A5A7VG93 Uncharacterized protein2.4e-0534.65Show/hide
Query:  DRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTT
        D +FF      D+W  +L  M +    S   G+ G +LS I     GK  RR++WR+ W +T+ FIW ERN R+H  G  R P+V+   +   +  R  +
Subjt:  DRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTT

Query:  W
        W
Subjt:  W

A0A5D3DSA8 Putative non-LTR retroelement reverse transcriptase2.4e-0537.78Show/hide
Query:  DLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTTW
        D+W  +L  M +    S   G  G +LS IC    GK  RR++WR+ W +T+ FIW ERN R+H  G  R P VI   +   +  R  +W
Subjt:  DLWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTTW

A0A6J1DYP6 uncharacterized protein LOC1110247375.8e-1561.43Show/hide
Query:  SDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTTWLGSC
        ++L+ IC   AG S+RR VWRLAWTSTVS +W ERN R+H  G GR  SV+L  +KA+VY+RCTTW GSC
Subjt:  SDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCTTWLGSC

A0A6J1E271 uncharacterized protein LOC1110253241.7e-0643.9Show/hide
Query:  LWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKV
        +W G++   G++   S       ++L+ IC    G S+RR VWRLAWT TVS +W E N R+H  G GRS SV+L  +KA+V
Subjt:  LWFGLLLEMGNAVLCSMMFGSLGSDLSEIC---AGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTGAAAGTCGAGGTACAGGTGAAGATCGGGAGGAAGCCACTGGGCCGCGATGGGCTCGGTCCCGACCCGGGGCTCGGCCCACGGCCCTCCAGCGGTCCTTCGT
CTTCGATCCACGGTTTCGTCCAGGCCCACCAACGAAATTAGGGTTAGCTACCTATGGAATGTTCTGGAACAACCTGACGACTATAAGTAGCGATCCAGCCTTAGAGTCCC
AGATCAACAAGTTTGGTAGGTGCGAGGAGGTGAACCGGAGGACCGAAATCCACGCATCAACATATTCCTTTGCGGGAGGGTGGGTTAGGCCTATATTCTTCGTGGGGATT
GTTTATGGACCGTTCGTGCCTCGCCTCGATTCTCTTGGTGTTGACAGGATATTCTTTCTGCTCCGGATGTTTTTCGACCTTTGGTTCGGTTTGCTATTGGAGATGGGCAA
TGCTGTTTTGTGTAGCATGATGTTTGGTTCCTTGGGGTCCGATTTATCCGAGATTTGTGCTGGGAAGTCTGCTCGTCGTCGTGTGTGGCGATTGGCGTGGACTTCGACAG
TTTCTTTTATTTGGGGGGAGCGTAATGCTAGAGTTCATGCGAATGGGGTAGGTCGGTCGCCTTCTGTTATCTTGAGTGCTTTGAAAGCTAAGGTTTATTATCGTTGTACT
ACATGGCTGGGAAGTTGCTTGTTTAAGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTGAAAGTCGAGGTACAGGTGAAGATCGGGAGGAAGCCACTGGGCCGCGATGGGCTCGGTCCCGACCCGGGGCTCGGCCCACGGCCCTCCAGCGGTCCTTCGT
CTTCGATCCACGGTTTCGTCCAGGCCCACCAACGAAATTAGGGTTAGCTACCTATGGAATGTTCTGGAACAACCTGACGACTATAAGTAGCGATCCAGCCTTAGAGTCCC
AGATCAACAAGTTTGGTAGGTGCGAGGAGGTGAACCGGAGGACCGAAATCCACGCATCAACATATTCCTTTGCGGGAGGGTGGGTTAGGCCTATATTCTTCGTGGGGATT
GTTTATGGACCGTTCGTGCCTCGCCTCGATTCTCTTGGTGTTGACAGGATATTCTTTCTGCTCCGGATGTTTTTCGACCTTTGGTTCGGTTTGCTATTGGAGATGGGCAA
TGCTGTTTTGTGTAGCATGATGTTTGGTTCCTTGGGGTCCGATTTATCCGAGATTTGTGCTGGGAAGTCTGCTCGTCGTCGTGTGTGGCGATTGGCGTGGACTTCGACAG
TTTCTTTTATTTGGGGGGAGCGTAATGCTAGAGTTCATGCGAATGGGGTAGGTCGGTCGCCTTCTGTTATCTTGAGTGCTTTGAAAGCTAAGGTTTATTATCGTTGTACT
ACATGGCTGGGAAGTTGCTTGTTTAAGTTCTGA
Protein sequenceShow/hide protein sequence
METESRGTGEDREEATGPRWARSRPGARPTALQRSFVFDPRFRPGPPTKLGLATYGMFWNNLTTISSDPALESQINKFGRCEEVNRRTEIHASTYSFAGGWVRPIFFVGI
VYGPFVPRLDSLGVDRIFFLLRMFFDLWFGLLLEMGNAVLCSMMFGSLGSDLSEICAGKSARRRVWRLAWTSTVSFIWGERNARVHANGVGRSPSVILSALKAKVYYRCT
TWLGSCLFKF