CuGenDBv2

Gene ID	Moc04g34040
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transcription initiation factor IIF subunit beta
Genome location	chr4:25690184..25695337
RNA-Seq Expression	Moc04g34040
Synteny	Moc04g34040
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]

1.6e-138

91.73

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNNS+   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
        RSYSLNMSTDFIPMSVFSES  GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        ETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ES ++TK R
Subjt:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_008465664.1 PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]

8.7e-137

90.14

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Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPP------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKK
        RSY+LNMSTDFIPMSVFSES        GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKK
Subjt:  RSYSLNMSTDFIPMSVFSESPP------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKK

Query:  VVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        VVSKGSETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  VVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]

9.3e-139

92.09

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
        RSY+LNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        ETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_022133483.1 general transcription factor IIF subunit 2-like [Momordica charantia]

7.8e-154

100

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Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
        RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
Subjt:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]

9.0e-142

94.93

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Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDRCSSRKLQ NNNSV   GTDFLETNKADRAMWLLKCPQ VTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
        RSYSLNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK
        ETKRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESG+E K
Subjt:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

4.5e-139

92.09

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
        RSY+LNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        ETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

4.2e-137

90.14

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPP------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKK
        RSY+LNMSTDFIPMSVFSES        GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKK
Subjt:  RSYSLNMSTDFIPMSVFSESPP------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKK

Query:  VVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        VVSKGSETKRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +ETK R
Subjt:  VVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

3.8e-154

100

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
        RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
Subjt:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1HK34 Transcription initiation factor IIF subunit beta

1.0e-135

90.65

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MD DDKPIDR SSRKL  ++NS +  GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG +L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
        R+YSLNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        E KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

3.6e-136

90.65

Show/hide

Query:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL
        MD DDKPIDR SSRKL +N+++V+  GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG +L
Subjt:  MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSL

Query:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS
        R+YSLNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR
        E KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  ETKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

5.1e-15

32.32

Show/hide

Query:  MSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELE
        ++VF+ES   K ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+           +KK+      + KR R ++  + 
Subjt:  MSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELE

Query:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
         ++F  FE+  Y+  K L+  T QP  Y+KEILK++ V N KG+H+ T+ELKPEY+    E KS
Subjt:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

P41900 General transcription factor IIF subunit 2

7.9e-16

28.96

Show/hide

Query:  LETNKADRAMWLLKCPQAVT----RALSNSPDGPSR------PVAKVIVSVDP-LQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSE
        L+ + A R +WL+K P+ +     +A +N   G  R        A+V +S+ P + + D ++   TE  ++++   +  +L  +S    +D    S  S 
Subjt:  LETNKADRAMWLLKCPQAVT----RALSNSPDGPSR------PVAKVIVSVDP-LQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSE

Query:  SPPG--KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
        + P   K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +  ++F
Subjt:  SPPG--KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK
          FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  RLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK

Q01750 General transcription factor IIF subunit 2

6.7e-15

27.67

Show/hide

Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA   D G    S S      F+        ++VF+ES   K
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP
         ++EG ++ + + +P     E Y KL R +  +S    R  Q  D V   + +P+           +KK+      + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E KS
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Q2T9L9 General transcription factor IIF subunit 2

1.1e-14

27.27

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Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA   D G    S S      F+        ++VF+ES   K
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP
         ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+           +KK+      + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
        Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEY+    E KS
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Q8R0A0 General transcription factor IIF subunit 2

2.0e-14

27.67

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Query:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK
        K +  +WL+K P+ +++  +          A     V  L+   +   +   FT+  +LA   D G    S S      F+        ++VF+ES   K
Subjt:  KADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAGT-DSGNSLRSYSLNMSTDFI-------PMSVFSESPPGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP
         ++EG ++ + + +P     E Y KL R +  +S    R  Q +D V   + +P+           +KK+      + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E KS
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKS

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

4.7e-64

51.17

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Query:  LETNKADRAMWLLKCPQAVTRALSN----------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSES
        L+  K+DR++WL+KCP  V +A             S D P   +AK++  VDPL+     D S  EF M + G + GN  + Y+LNM TDF+PM  FS+ 
Subjt:  LETNKADRAMWLLKCPQAVTRALSN----------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSES

Query:  PPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVTSFGAAEKKKVVS-KGSETKRLRKERGELEKIIFR
          G    EGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  + S  + EK+K    K +E KR R++RGELE I+F+
Subjt:  PPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVTSFGAAEKKKVVS-KGSETKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE
        LFE QP WT KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEYK+S ++
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

2.0e-75

57.94

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Query:  LETNKADRAMWLLKCPQAVTRALSN--------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSESPP
        LET  A+R+M L+K P  V  +L +         PD P RP AKVI+ VDPL   D+     T+F MELA  DSGN  R Y+L+MS DFIPM+VF ES  
Subjt:  LETNKADRAMWLLKCPQAVTRALSN--------SPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTDFIPMSVFSESPP

Query:  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFER
        GK +VEGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM + +  A EKKK+ ++ SE KR R++R E+E+++F LFER
Subjt:  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFER

Query:  QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE
        Q  WT + LIQETDQPEQ++K++LKDLC+YNNKG +QGTYELKPEYK++  E
Subjt:  QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDE

Sequences

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CDS sequence

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ATGGACGTCGACGACAAACCCATCGACCGTTGCAGTTCCAGAAAACTCCAAACCAATAACAACTCCGTCTCCGGAACCGGAACCGACTTCTTGGAGACCAACAAGGCCGA
CAGAGCAATGTGGCTCTTGAAATGCCCCCAGGCCGTTACTCGCGCCCTTTCTAATTCGCCGGATGGCCCTTCTCGTCCGGTCGCCAAGGTCATCGTCTCCGTCGACCCTC
TGCAATCCAATGACGACGACGATTCTTCATCTACTGAGTTCACTATGGAATTGGCTGGCACTGATTCTGGAAATTCATTAAGGTCCTACTCATTGAATATGTCGACAGAC
TTCATTCCAATGTCGGTATTTTCCGAGTCACCACCAGGGAAGTTTACAGTTGAGGGGAAAATACTGAACAAATTTGACATGAAGCCCCATGATCAAAATCTTGAGAGGTA
TGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGATG
TGACGTCTTTTGGAGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGCGAATTGGAGAAGATTATTTTTAGGCTCTTT
GAAAGACAACCATATTGGACGTCGAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAAGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGTGT
TCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAGTCGGGTGATGAAACGAAATCGCGGTAG

mRNA sequence

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Protein sequence

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MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELAGTDSGNSLRSYSLNMSTD
FIPMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLF
ERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETKSR

Moc04g34040 (gene) of Bitter gourd (OHB3-1) v2 genome