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Moc04g34450 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g34450
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationchr4:25940288..25941014
RNA-Seq ExpressionMoc04g34450
SyntenyMoc04g34450
Gene Ontology termsNA
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030505320.1 uncharacterized protein LOC115720307 [Cannabis sativa]7.8e-0441.77Show/hide
Query:  IESARLGTLQGAPERNRLASRLRRAPGLTEYYL-------SLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
        ++S ++  +   P    L S LR   GLT YY        S+A P+ +  KK+ FCW+++AT  FE LKHAMV  PVLA
Subjt:  IESARLGTLQGAPERNRLASRLRRAPGLTEYYL-------SLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
TrEMBL top hitse value%identityAlignment
A0A151S1D5 Retrovirus-related Pol polyprotein from transposon 297 family6.5e-0450.85Show/hide
Query:  RLRRAPGLTEY-------YLSLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
        +LR   GLT Y       Y+ LAAP+  L KK+AF W E+AT  F+KLK AM+  PVLA
Subjt:  RLRRAPGLTEY-------YLSLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
A0A5A7UNX8 Transposon Ty3-I Gag-Pol polyprotein5.0e-0449.21Show/hide
Query:  RLASRLRRAPGLTEYYL-------SLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
        R    LR   GLT YY        ++AAP+ +L KKN+F W E+AT+ FE+LK AMV  PVLA
Subjt:  RLASRLRRAPGLTEYYL-------SLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
A0A803PK76 Uncharacterized protein6.5e-0451.72Show/hide
Query:  LRRAPGLTEYYL-------SLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
        LR   GLT YY        S+A P+ +  KK+ FCW+E ATA FE LK AMV  PVLA
Subjt:  LRRAPGLTEYYL-------SLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
B0B0D4 Putative reverse transcriptase (Fragment)8.5e-0451.72Show/hide
Query:  LRRAPGLTEYYL-------SLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
        LR   GLT YY        ++AAP+ +L KKN F W E+AT  FE+LK AMV  PVLA
Subjt:  LRRAPGLTEYYL-------SLAAPVAQLNKKNAFCWDEQATAVFEKLKHAMVITPVLA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGAGACGGGAGCGGGCGATGGCCAGAGATAGAGGGTGGTGAAGGTGAATGTCGAGAGGCAGAGAGAATGGTTAGGGTTTGTGGACTAAGGTATTTCGCGAGGGA
GAAAGGAGAGAGGAGCACAAAGGAGCACCGAGGCGAGCGCCCAATTGAAAGCGCTCGCCTGGGCACCTTGCAAGGCGCACCTGAGCGAAATCGCCTCGCCTCTCGTCTGA
GGCGAGCGCCCGGCTTGACAGAGTATTACTTGTCCCTAGCAGCCCCAGTAGCCCAACTTAATAAGAAGAATGCCTTTTGCTGGGATGAGCAAGCCACCGCAGTCTTTGAG
AAATTGAAGCATGCCATGGTGATTACACCAGTTCTAGCCTGCCTGATTCCAATTTATGAACATGGTACTATCAAAGTTGTTCGTGGTAATAGCGGATTTAGCCAAAGATA
G
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGAGACGGGAGCGGGCGATGGCCAGAGATAGAGGGTGGTGAAGGTGAATGTCGAGAGGCAGAGAGAATGGTTAGGGTTTGTGGACTAAGGTATTTCGCGAGGGA
GAAAGGAGAGAGGAGCACAAAGGAGCACCGAGGCGAGCGCCCAATTGAAAGCGCTCGCCTGGGCACCTTGCAAGGCGCACCTGAGCGAAATCGCCTCGCCTCTCGTCTGA
GGCGAGCGCCCGGCTTGACAGAGTATTACTTGTCCCTAGCAGCCCCAGTAGCCCAACTTAATAAGAAGAATGCCTTTTGCTGGGATGAGCAAGCCACCGCAGTCTTTGAG
AAATTGAAGCATGCCATGGTGATTACACCAGTTCTAGCCTGCCTGATTCCAATTTATGAACATGGTACTATCAAAGTTGTTCGTGGTAATAGCGGATTTAGCCAAAGATA
G
Protein sequenceShow/hide protein sequence
MVGDGSGRWPEIEGGEGECREAERMVRVCGLRYFAREKGERSTKEHRGERPIESARLGTLQGAPERNRLASRLRRAPGLTEYYLSLAAPVAQLNKKNAFCWDEQATAVFE
KLKHAMVITPVLACLIPIYEHGTIKVVRGNSGFSQR