CuGenDBv2

Gene ID	Moc04g36590
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Genome location	chr4:27463437..27466197
RNA-Seq Expression	Moc04g36590
Synteny	Moc04g36590
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0030430 - host cell cytoplasm (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]

2.4e-65

95.68

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        +EEYQAKDSRMEKYLGKVRS+LAQFRTYEVSRVPRAENSNADALAKLASAYET+LARSVPVEILDN SISEPDLMEIGAPES WMDPIADFIRGNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL
        KERRKLARRAARFVVRG ALYRRGFSLPLLRCLTPEEGL
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL

XP_022142324.1 uncharacterized protein LOC111012466 [Momordica charantia]

3.1e-65

94.24

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        +EEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADAL KLASAYETDLARSVP+EILDN SISEPDLMEIGAPES WMDPIADFIRGNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL
         E RKLARRAARFVVRGGALYRRGFSLPLLRCLTP+EGL
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL

XP_022143486.1 uncharacterized protein LOC111013362 [Momordica charantia]

8.2e-66

94.96

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        ++EYQAKD+RMEKYLGKVRSYLAQFRTYEVSR+PRAENSNADALAKLASAYETDLARSVPVEILDN SISEPDLMEIGAPES WMDPIADFIRGNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL
        KERRKLARRAARFVVR GALYRRGFSLPLLRCLTPEEGL
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL

XP_022158219.1 protein NYNRIN-like [Momordica charantia]

1.3e-63

92.81

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        ++EYQAKD+RMEKYLGKVRSYLAQF TYEVSR+PRAENSNADALAKLASAYETDLARSVPVEILDN SISEPDLMEIGAPES WMDPIADFIRGNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL
        KERRKLA R ARFVVR GALYRRGFSLPLLRCLTPEEGL
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL

XP_022158520.1 uncharacterized protein LOC111024991 [Momordica charantia]

3.8e-63

88.73

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        ++EYQAKD+RMEKYLGKVRSYLAQFRTYEVSR+PR ENSNADALAKLASAYETDLARSVPVEILDN SI EPDLMEIGAPES WM+PI DFI+GNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLVGA
        KERRKLARRAARFV+R GALYRRGFSLPLL+CLTPEEGL  A
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLVGA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C617 Ribonuclease H

1.2e-65

95.68

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        +EEYQAKDSRMEKYLGKVRS+LAQFRTYEVSRVPRAENSNADALAKLASAYET+LARSVPVEILDN SISEPDLMEIGAPES WMDPIADFIRGNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL
        KERRKLARRAARFVVRG ALYRRGFSLPLLRCLTPEEGL
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL

A0A6J1CL97 uncharacterized protein LOC111012466

1.5e-65

94.24

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        +EEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADAL KLASAYETDLARSVP+EILDN SISEPDLMEIGAPES WMDPIADFIRGNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL
         E RKLARRAARFVVRGGALYRRGFSLPLLRCLTP+EGL
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL

A0A6J1CQD7 Ribonuclease H

4.0e-66

94.96

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        ++EYQAKD+RMEKYLGKVRSYLAQFRTYEVSR+PRAENSNADALAKLASAYETDLARSVPVEILDN SISEPDLMEIGAPES WMDPIADFIRGNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL
        KERRKLARRAARFVVR GALYRRGFSLPLLRCLTPEEGL
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL

A0A6J1DW30 Ribonuclease H

1.9e-63

88.73

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        ++EYQAKD+RMEKYLGKVRSYLAQFRTYEVSR+PR ENSNADALAKLASAYETDLARSVPVEILDN SI EPDLMEIGAPES WM+PI DFI+GNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLVGA
        KERRKLARRAARFV+R GALYRRGFSLPLL+CLTPEEGL  A
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLVGA

A0A6J1DYS0 Ribonuclease H

6.4e-64

92.81

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Query:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP
        ++EYQAKD+RMEKYLGKVRSYLAQF TYEVSR+PRAENSNADALAKLASAYETDLARSVPVEILDN SISEPDLMEIGAPES WMDPIADFIRGNSPQDP
Subjt:  QEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGAPESLWMDPIADFIRGNSPQDP

Query:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL
        KERRKLA R ARFVVR GALYRRGFSLPLLRCLTPEEGL
Subjt:  KERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGGCCCCGGCCACCTTCGCCGAGGTGCTTCAGAAGGCGAAGAAAGTCATCGATGGACAGGAACTCCTCCGAACCAAAACCGGCCGACCAGAACGAAGATCGGCCGGA
GCAAAAGTGGAAAAGATATAGAAAAGGCAGATCCCAAGTCCAAGACAAGGGATCCTTCTCCAGCGGCCGAGCTGAGTATCGAAGGGCGGAGAACGGACCTACCAGGAGCC
GACCTTACGAATGCTTCACCCCGACCACGATTCCAATTTCCGAGATCCTAACGTACATCGAGGAGTCTGGAATGGAAAAACTACTCAAACGTCCTGAGAAGCTTCGGGGA
GCCCCGGAGAGGCGCAGCAAGGACAAGTATTGCCGCTTCCATCAGGAGTACGGCCATAACACGTCGGACTGCTGGGAGCCACCGACAGAGAAGCAAGAAGAGTACCAAGC
CAAAGACTCCCGAATGGAGAAGTATTTGGGCAAGGTCAGATCGTACCTCGCCCAGTTTCGAACTTACGAAGTAAGCCGGGTTCCCCGAGCAGAAAATTCTAATGCTGACG
CCTTGGCCAAGTTAGCATCGGCGTACGAGACCGACCTGGCCAGGTCGGTCCCCGTCGAGATCTTAGATAATTCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCT
CCAGAGTCCTTATGGATGGACCCGATTGCGGACTTCATTAGAGGCAACTCACCACAAGACCCGAAGGAGCGTAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCG
AGGTGGAGCATTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCCTAGTTGGTGCAATGCATTGA

mRNA sequence

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Protein sequence

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MRPRPPSPRCFRRRRKSSMDRNSSEPKPADQNEDRPEQKWKRYRKGRSQVQDKGSFSSGRAEYRRAENGPTRSRPYECFTPTTIPISEILTYIEESGMEKLLKRPEKLRG
APERRSKDKYCRFHQEYGHNTSDCWEPPTEKQEEYQAKDSRMEKYLGKVRSYLAQFRTYEVSRVPRAENSNADALAKLASAYETDLARSVPVEILDNSSISEPDLMEIGA
PESLWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGLVGAMH

Moc04g36590 (gene) of Bitter gourd (OHB3-1) v2 genome