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Moc04g37960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g37960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr4:28431172..28434074
RNA-Seq ExpressionMoc04g37960
SyntenyMoc04g37960
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018855783.2 uncharacterized protein LOC109018046 [Juglans regia]1.1e-1436.5Show/hide
Query:  GILIRDD-ENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV
        G+++RD+ EN + A   S   L  P LVE LA+  G++  + +G SKVV+ESD L  V+ +  NE  L+   +L+ ++R+L  +F+ +++Q V R GN+V
Subjt:  GILIRDD-ENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV

Query:  AHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNI
        AH LA++A S+    +W+   P +L   +   D+TN+
Subjt:  AHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNI

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.3e-2340.37Show/hide
Query:  GGVTYVSNLPEKGGDSGSRSGILIRDDENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHL
        GGV  + N      + GS  G+L+R+    +  AM+    + +PLL + LAIREG+ LA R+G  +VVVE+DSLEA+ LI     W  E VS + DIR  
Subjt:  GGVTYVSNLPEKGGDSGSRSGILIRDDENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHL

Query:  CVNFDDFRIQHVRREGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALASY
          +F +   QHV RE N VA+ L R  IS+    LW  DFP+WL    +A  + ++AL ++
Subjt:  CVNFDDFRIQHVRREGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALASY

XP_023919081.1 uncharacterized protein LOC112030645 [Quercus suber]2.8e-1335.66Show/hide
Query:  PEKGGDSGSRSGILIRDDENRVQAAMISSQRLG-SPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFR
        PE+   +G   G++IR+ E  V  ++     L  SPL +E  AI   +  A  +GF + ++E+DSL  VK + ++  +L+ V  ++ +IR     F++  
Subjt:  PEKGGDSGSRSGILIRDDENRVQAAMISSQRLG-SPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFR

Query:  IQHVRREGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKAD
          HV+REGN VAH LAR+AIS++  ++W+ D P  L   V AD
Subjt:  IQHVRREGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKAD

XP_027067558.1 uncharacterized protein LOC113693185 [Coffea arabica]5.6e-1433.56Show/hide
Query:  SGSRSGILIRD-DENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRR
        +G+  G++ RD D N VQA  I     G   + E  A+R+G+ +A   G+ ++ +++D   A++ I K       + ++I DIRHL   F D     V R
Subjt:  SGSRSGILIRD-DENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRR

Query:  EGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALAS
        +GNR AH +A+ A  + S ++W   FP+W   S++ D+RTN+ L +
Subjt:  EGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALAS

XP_030939190.1 uncharacterized protein LOC115964041 [Quercus lobata]2.8e-1339.39Show/hide
Query:  GILIRDDENRVQAAMISSQRLGSPLL-VETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV
        G++IR+ +  V A++     L + ++ VETLA R  +  A+ +GF K+V+E DS   +KL+      L     LI DI  L   F  FR  HVRR  N+V
Subjt:  GILIRDDENRVQAAMISSQRLGSPLL-VETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV

Query:  AHILARNAISINSPLLWLCDFPVWLLSSVKAD
        A++LAR AIS +   +W+ D P  LLS ++AD
Subjt:  AHILARNAISINSPLLWLCDFPVWLLSSVKAD

TrEMBL top hitse value%identityAlignment
A0A1D6MWR3 RNase H domain-containing protein1.1e-1233.33Show/hide
Query:  GILIRDDENRVQAAMIS-SQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV
        G+++R+ +  V AA     + +   L  E LA R+G+ LA  +   K ++E D+   V L+   EG  + +  L  +I+   +NF  F++  V REGN V
Subjt:  GILIRDDENRVQAAMIS-SQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV

Query:  AHILARNAISINSPLLWLCDFPVWLLSSVKAD
        AH+ A  AI +   L WL  FP WL+ +   D
Subjt:  AHILARNAISINSPLLWLCDFPVWLLSSVKAD

A0A2I4HHZ2 uncharacterized protein LOC1090180465.5e-1536.5Show/hide
Query:  GILIRDD-ENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV
        G+++RD+ EN + A   S   L  P LVE LA+  G++  + +G SKVV+ESD L  V+ +  NE  L+   +L+ ++R+L  +F+ +++Q V R GN+V
Subjt:  GILIRDD-ENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV

Query:  AHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNI
        AH LA++A S+    +W+   P +L   +   D+TN+
Subjt:  AHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNI

A0A6J1DZK3 uncharacterized protein LOC1110249686.4e-2440.37Show/hide
Query:  GGVTYVSNLPEKGGDSGSRSGILIRDDENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHL
        GGV  + N      + GS  G+L+R+    +  AM+    + +PLL + LAIREG+ LA R+G  +VVVE+DSLEA+ LI     W  E VS + DIR  
Subjt:  GGVTYVSNLPEKGGDSGSRSGILIRDDENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHL

Query:  CVNFDDFRIQHVRREGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALASY
          +F +   QHV RE N VA+ L R  IS+    LW  DFP+WL    +A  + ++AL ++
Subjt:  CVNFDDFRIQHVRREGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALASY

A0A6P6SNV4 uncharacterized protein LOC1136931852.7e-1433.56Show/hide
Query:  SGSRSGILIRD-DENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRR
        +G+  G++ RD D N VQA  I     G   + E  A+R+G+ +A   G+ ++ +++D   A++ I K       + ++I DIRHL   F D     V R
Subjt:  SGSRSGILIRD-DENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRR

Query:  EGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALAS
        +GNR AH +A+ A  + S ++W   FP+W   S++ D+RTN+ L +
Subjt:  EGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALAS

A0A6P6UIH5 uncharacterized protein LOC1137106611.8e-1333.56Show/hide
Query:  SGSRSGILIRDDE-NRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRR
        +G+  G++ RD E N VQA  I         + E  A+R+G+ +A   G+ ++ +++D   A++ I K       + ++I DIRHL   F D     V R
Subjt:  SGSRSGILIRDDE-NRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRR

Query:  EGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALAS
        +GNR AH +A+ A  + S ++W   FP+WL  S++ D+RTN+ L +
Subjt:  EGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein6.6e-0528.85Show/hide
Query:  ENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNA
        E  +       +R  SPL  E  AI+  +  A+++  S ++V SDS   V  +  N   LNE+  L+V+IR +   F     Q + R  N +A   A+ +
Subjt:  ENRVQAAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNA

Query:  ISIN
        + I+
Subjt:  ISIN

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0630.77Show/hide
Query:  SPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNAISINSPLLW--LCDF
        +PL  ET A+   ++     G+ +V++E D      L+  +    N + +L+ DIR     F + +   VRR GN+VAH LA+  +  NS   +   C  
Subjt:  SPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNAISINSPLLW--LCDF

Query:  PVWL
        P+WL
Subjt:  PVWL

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-0527.93Show/hide
Query:  RLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNAISINS--PLLWL
        R  + L  E  A+R  +    R  + +++ ESD+   V L+  ++ W   +   + DI+ L  +F++ + +   R GN+VA  +AR +IS ++  P L+ 
Subjt:  RLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNAISINS--PLLWL

Query:  CDFPVWLLSSV
           P WL S++
Subjt:  CDFPVWLLSSV

AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-0426.15Show/hide
Query:  GILIRDDENRVQ-AAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV
        G ++R+++  V+     +  +L S L  E  A+R  +    R  ++ V+ ESDS   ++++  +E W   +   I D++ L   F + +   + REGN +
Subjt:  GILIRDDENRVQ-AAMISSQRLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRV

Query:  AHILARNAIS-INSPLLWLCDFPVWLLSSV
        A  +AR ++S +N         P W  SS+
Subjt:  AHILARNAIS-INSPLLWLCDFPVWLLSSV

AT5G42965.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.7e-0835.16Show/hide
Query:  RLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNAISI
        R+ + L VE  A+R       R  + KV+ ESDS   V L+  +  + N +   I DIRH+   F++ ++ H++REGN VA  +AR ++S+
Subjt:  RLGSPLLVETLAIREGIRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNAISI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATCATGCTTTTGCTTGAAAACAAAACTGAAGCAAAGGCTAGACGTACGAAACTCACCGGAAGATGGATAAGAAATCGTCGGAAACTTCTCGCCGACGGCGAATC
CCGGTTCAAAGGCCTCACCACAGAACGTAATGACAAACTTGAAGAGAAGAGGTACGGAGGTGTCACCTATGTGTCCAATTTGCCTGAAAAAGGAGGAGACAGTGGATCAC
GCTCTGGGATTTTAATCCGTGATGATGAAAATCGGGTACAAGCGGCGATGATTTCTTCCCAGCGTTTGGGAAGCCCCCTTTTGGTGGAAACCCTTGCTATCAGAGAAGGA
ATTCGTTTGGCGATGCGGATGGGTTTCAGTAAGGTGGTGGTCGAATCTGACTCCCTCGAAGCGGTTAAACTTATAGAGAAGAATGAGGGGTGGTTAAATGAGGTGGTTTC
ATTGATTGTTGACATCAGACATTTGTGTGTGAATTTTGACGATTTTCGAATTCAGCATGTTCGTCGTGAGGGAAATAGGGTCGCTCATATTCTCGCTAGAAATGCCATTT
CTATAAATAGTCCCCTTCTTTGGCTTTGTGATTTTCCAGTTTGGCTTCTGAGCAGTGTGAAAGCTGATGATCGCACTAATATAGCCTTGGCAAGTTATTTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACATCATGCTTTTGCTTGAAAACAAAACTGAAGCAAAGGCTAGACGTACGAAACTCACCGGAAGATGGATAAGAAATCGTCGGAAACTTCTCGCCGACGGCGAATC
CCGGTTCAAAGGCCTCACCACAGAACGTAATGACAAACTTGAAGAGAAGAGGTACGGAGGTGTCACCTATGTGTCCAATTTGCCTGAAAAAGGAGGAGACAGTGGATCAC
GCTCTGGGATTTTAATCCGTGATGATGAAAATCGGGTACAAGCGGCGATGATTTCTTCCCAGCGTTTGGGAAGCCCCCTTTTGGTGGAAACCCTTGCTATCAGAGAAGGA
ATTCGTTTGGCGATGCGGATGGGTTTCAGTAAGGTGGTGGTCGAATCTGACTCCCTCGAAGCGGTTAAACTTATAGAGAAGAATGAGGGGTGGTTAAATGAGGTGGTTTC
ATTGATTGTTGACATCAGACATTTGTGTGTGAATTTTGACGATTTTCGAATTCAGCATGTTCGTCGTGAGGGAAATAGGGTCGCTCATATTCTCGCTAGAAATGCCATTT
CTATAAATAGTCCCCTTCTTTGGCTTTGTGATTTTCCAGTTTGGCTTCTGAGCAGTGTGAAAGCTGATGATCGCACTAATATAGCCTTGGCAAGTTATTTTCTTTAA
Protein sequenceShow/hide protein sequence
MNIMLLLENKTEAKARRTKLTGRWIRNRRKLLADGESRFKGLTTERNDKLEEKRYGGVTYVSNLPEKGGDSGSRSGILIRDDENRVQAAMISSQRLGSPLLVETLAIREG
IRLAMRMGFSKVVVESDSLEAVKLIEKNEGWLNEVVSLIVDIRHLCVNFDDFRIQHVRREGNRVAHILARNAISINSPLLWLCDFPVWLLSSVKADDRTNIALASYFL