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Moc05g09030 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g09030
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Genome locationchr5:6942142..6942816
RNA-Seq ExpressionMoc05g09030
SyntenyMoc05g09030
Gene Ontology termsGO:0006139 - nucleobase-containing compound metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5478058.1 hypothetical protein F2P56_004648, partial [Juglans regia]1.4e-0626.52Show/hide
Query:  CPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRN----------QFNGS-------FVDRWSV--------LMDSLSPKDLTLSLINSNAVCGQIE
        C      DE  DHAL+ CK   E+W  LLPEV +   +          QF G+       F+  W V         M    P +  +  +N +      +
Subjt:  CPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRN----------QFNGS-------FVDRWSV--------LMDSLSPKDLTLSLINSNAVCGQIE

Query:  GRSGVGALIWDE-NNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEV---IHNELAS
         R+GVG ++ D+    I +A    + + + + +E++AI   L++   +G P++V ESDSL  V+ I +++    +H  L +
Subjt:  GRSGVGALIWDE-NNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEV---IHNELAS

XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]9.5e-1135.4Show/hide
Query:  EIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTL-------------SLINSNAV------------------------------CGQIEGRSG
        +IW  +LPE   +  + FN  +++RWS  M +LS  +L L             +LIN   +                                  EG SG
Subjt:  EIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTL-------------SLINSNAV------------------------------CGQIEGRSG

Query:  VGALIWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLI
        VG L+ D N  I AA+   H +  P+L EILAIRE LRLA+R+G  +V+ ESDSLEA+NLI
Subjt:  VGALIWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLI

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.9e-0641.57Show/hide
Query:  LINSNAVCGQIEGRSGVGALIWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEVIHNELAS
        ++  N      E  SGVG L+ + N  I  A+   H +  P+L +ILAIRE L LA+R+G  +VV E+DSLEA+NLI  +     E  S
Subjt:  LINSNAVCGQIEGRSGVGALIWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEVIHNELAS

XP_030930729.1 uncharacterized protein LOC115956517 [Quercus lobata]4.1e-0624.85Show/hide
Query:  GMDVSSICPIYDSKDEYIDHALVGCKRNTE--------------IWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTLSLINSNAVCGQIEGRSG
        G+ +   CPI     E ++HA++                     +WGL +  +++ ++ + N   +++      +  P    + LIN +      EG SG
Subjt:  GMDVSSICPIYDSKDEYIDHALVGCKRNTE--------------IWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTLSLINSNAVCGQIEGRSG

Query:  VGALIWDENNTIQAALFSSHPLLNPILV---EILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEV
        +G +I D NN + AAL  S PL     V   E +A+ + + LA  +G  +++ E DS++ V  I +++V
Subjt:  VGALIWDENNTIQAALFSSHPLLNPILV---EILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEV

XP_035543624.1 uncharacterized protein LOC118347700 [Juglans regia]1.4e-0626.52Show/hide
Query:  CPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRN----------QFNGS-------FVDRWSV--------LMDSLSPKDLTLSLINSNAVCGQIE
        C      DE  DHAL+ CK   E+W  LLPEV +   +          QF G+       F+  W V         M    P +  +  +N +      +
Subjt:  CPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRN----------QFNGS-------FVDRWSV--------LMDSLSPKDLTLSLINSNAVCGQIE

Query:  GRSGVGALIWDE-NNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEV---IHNELAS
         R+GVG ++ D+    I +A    + + + + +E++AI   L++   +G P++V ESDSL  V+ I +++    +H  L +
Subjt:  GRSGVGALIWDE-NNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEV---IHNELAS

TrEMBL top hitse value%identityAlignment
A0A6J1DPU1 uncharacterized protein LOC1110224264.6e-1135.4Show/hide
Query:  EIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTL-------------SLINSNAV------------------------------CGQIEGRSG
        +IW  +LPE   +  + FN  +++RWS  M +LS  +L L             +LIN   +                                  EG SG
Subjt:  EIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTL-------------SLINSNAV------------------------------CGQIEGRSG

Query:  VGALIWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLI
        VG L+ D N  I AA+   H +  P+L EILAIRE LRLA+R+G  +V+ ESDSLEA+NLI
Subjt:  VGALIWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLI

A0A6J1DX30 uncharacterized protein LOC1110248743.2e-0425.47Show/hide
Query:  CPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTLSLI-----------------------------------
        C I   + E I HA   CKR  +IW  L P  +     + N SF++ WS L + L PKDL L+ I                                   
Subjt:  CPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTLSLI-----------------------------------

Query:  ---------------------------------NSNAVCGQIEGRSGVGALIWDENNTIQAALFSSHPL-LNPILVEILAIRERLRLASRMGFPKVVAES
                                         N++A C      +  G +I D + ++ AA     P  L+P+L EI  I E L+ A+   F  +  ES
Subjt:  ---------------------------------NSNAVCGQIEGRSGVGALIWDENNTIQAALFSSHPL-LNPILVEILAIRERLRLASRMGFPKVVAES

Query:  DSLEAVNLITSE
        DSL A+ LI +E
Subjt:  DSLEAVNLITSE

A0A6J1DZK3 uncharacterized protein LOC1110249689.0e-0741.57Show/hide
Query:  LINSNAVCGQIEGRSGVGALIWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEVIHNELAS
        ++  N      E  SGVG L+ + N  I  A+   H +  P+L +ILAIRE L LA+R+G  +VV E+DSLEA+NLI  +     E  S
Subjt:  LINSNAVCGQIEGRSGVGALIWDENNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEVIHNELAS

A0A6P9E857 uncharacterized protein LOC1183477006.9e-0726.52Show/hide
Query:  CPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRN----------QFNGS-------FVDRWSV--------LMDSLSPKDLTLSLINSNAVCGQIE
        C      DE  DHAL+ CK   E+W  LLPEV +   +          QF G+       F+  W V         M    P +  +  +N +      +
Subjt:  CPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRN----------QFNGS-------FVDRWSV--------LMDSLSPKDLTLSLINSNAVCGQIE

Query:  GRSGVGALIWDE-NNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEV---IHNELAS
         R+GVG ++ D+    I +A    + + + + +E++AI   L++   +G P++V ESDSL  V+ I +++    +H  L +
Subjt:  GRSGVGALIWDE-NNTIQAALFSSHPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEV---IHNELAS

A0A803Q3B9 Uncharacterized protein5.8e-0627.89Show/hide
Query:  VSSICPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTLSLINSNAVCGQIEGRSGVGALIWDENNTIQAALF
        +SSIC + ++ +E I HALVGC      W     ++       F+  + +    +++  +P +     +N +    +  GR GVG    D    I AA  
Subjt:  VSSICPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTLSLINSNAVCGQIEGRSGVGALIWDENNTIQAALF

Query:  SS-HPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITS
         S    + P + EI+ I+E L       +  VV E+DSL  V  I S
Subjt:  SS-HPLLNPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATGGATGTCTCATCAATATGTCCTATATACGATTCTAAGGATGAATATATTGATCATGCTCTGGTGGGATGTAAAAGAAATACAGAAATATGGGGATTGCTCTT
ACCTGAAGTGGTCCAGAAATATAGAAATCAGTTCAATGGAAGTTTTGTAGATCGATGGTCGGTGCTGATGGATTCTCTCTCTCCAAAGGACTTAACTCTCTCGTTGATCA
ATTCGAACGCTGTCTGTGGCCAAATTGAAGGAAGATCTGGAGTTGGGGCTTTGATTTGGGATGAGAACAATACTATTCAGGCGGCTCTTTTCTCGTCCCATCCTCTCCTT
AACCCGATTTTGGTAGAAATTTTGGCGATTCGAGAGAGGCTTCGTCTGGCTTCTCGGATGGGGTTCCCCAAAGTTGTGGCGGAGTCGGATTCACTGGAAGCTGTTAACCT
GATCACCAGTGAGGAAGTTATTCACAACGAGTTGGCGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCATGGATGTCTCATCAATATGTCCTATATACGATTCTAAGGATGAATATATTGATCATGCTCTGGTGGGATGTAAAAGAAATACAGAAATATGGGGATTGCTCTT
ACCTGAAGTGGTCCAGAAATATAGAAATCAGTTCAATGGAAGTTTTGTAGATCGATGGTCGGTGCTGATGGATTCTCTCTCTCCAAAGGACTTAACTCTCTCGTTGATCA
ATTCGAACGCTGTCTGTGGCCAAATTGAAGGAAGATCTGGAGTTGGGGCTTTGATTTGGGATGAGAACAATACTATTCAGGCGGCTCTTTTCTCGTCCCATCCTCTCCTT
AACCCGATTTTGGTAGAAATTTTGGCGATTCGAGAGAGGCTTCGTCTGGCTTCTCGGATGGGGTTCCCCAAAGTTGTGGCGGAGTCGGATTCACTGGAAGCTGTTAACCT
GATCACCAGTGAGGAAGTTATTCACAACGAGTTGGCGTCCTAG
Protein sequenceShow/hide protein sequence
MGMDVSSICPIYDSKDEYIDHALVGCKRNTEIWGLLLPEVVQKYRNQFNGSFVDRWSVLMDSLSPKDLTLSLINSNAVCGQIEGRSGVGALIWDENNTIQAALFSSHPLL
NPILVEILAIRERLRLASRMGFPKVVAESDSLEAVNLITSEEVIHNELAS