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Moc05g09660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g09660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr5:7502106..7503874
RNA-Seq ExpressionMoc05g09660
SyntenyMoc05g09660
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA35126.1 PREDICTED: ribonuclease H At1g65750 [Prunus dulcis]9.6e-0535.8Show/hide
Query:  DCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADC
        D L++V  +   S++ + +  +VED    +  +  EGF H+ R ANGVAH +AR A   G S  W +  P ++S +L  DC
Subjt:  DCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADC

XP_021800524.1 uncharacterized protein LOC110744812 [Prunus avium]2.1e-0434.88Show/hide
Query:  EAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI
        E   D  E++ +I   S+  TE+  I+ DI   V       F+H+PR  N  AH +A      G S  W+Q  P WL ++LA D I
Subjt:  EAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.5e-2187.3Show/hide
Query:  KEEAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRAC
        K E   DCLEVVNIINKSSM LTEVSLIVEDIWKE+ESLP+EGFKHLP KANGVAHGIARRAC
Subjt:  KEEAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRAC

XP_027109195.1 uncharacterized protein LOC113729068 [Coffea arabica]1.9e-0532.53Show/hide
Query:  GDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI
        GDCL+VV ++  +  + +   ++V+DI ++++S        +PR+ N VAH +A+ AC       W  F P ++   LAAD I
Subjt:  GDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI

XP_027158404.1 uncharacterized protein LOC113760026 [Coffea eugenioides]1.9e-0532.53Show/hide
Query:  GDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI
        GDCL+VV ++  +  + +   ++V+DI ++++S        +PR+ N VAH +A+ AC       W  F P ++   LAAD I
Subjt:  GDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI

TrEMBL top hitse value%identityAlignment
A0A5E4G5X9 PREDICTED: ribonuclease H At1g657504.7e-0535.8Show/hide
Query:  DCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADC
        D L++V  +   S++ + +  +VED    +  +  EGF H+ R ANGVAH +AR A   G S  W +  P ++S +L  DC
Subjt:  DCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADC

A0A6J1D4B6 uncharacterized protein LOC1110171811.2e-2187.3Show/hide
Query:  KEEAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRAC
        K E   DCLEVVNIINKSSM LTEVSLIVEDIWKE+ESLP+EGFKHLP KANGVAHGIARRAC
Subjt:  KEEAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRAC

A0A6P5RC34 uncharacterized protein LOC1107448121.0e-0434.88Show/hide
Query:  EAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI
        E   D  E++ +I   S+  TE+  I+ DI   V       F+H+PR  N  AH +A      G S  W+Q  P WL ++LA D I
Subjt:  EAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI

A0A6P6W2N9 uncharacterized protein LOC1137290689.4e-0632.53Show/hide
Query:  GDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI
        GDCL+VV ++  +  + +   ++V+DI ++++S        +PR+ N VAH +A+ AC       W  F P ++   LAAD I
Subjt:  GDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADCI

M5XSK0 Reverse transcriptase domain-containing protein1.0e-0435.8Show/hide
Query:  DCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADC
        D L++V  +   S++ + +  +VED    +  +  EGF H+ R ANGVAH +AR A   G S  W +  P ++S +L  DC
Subjt:  DCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSALLAADC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTCCTCGACGTCGTCGGAGGTATCTCCGGCAGCACCTCCTGAAAAGGGTTGTCGAAGTGGGAGAAGTCCGCCGGTGGAGAAGGAGGAAGCTGCTGGAGATTGTCT
GGAAGTAGTGAACATCATCAATAAATCGTCCATGGAGCTCACCGAAGTTTCTCTAATTGTTGAAGACATATGGAAAGAGGTGGAATCCTTGCCAGTTGAAGGATTCAAGC
ATCTGCCGAGGAAGGCTAATGGAGTCGCTCATGGGATAGCAAGGAGAGCGTGCGAAGAGGGATTCTCGTCTTCGTGGAACCAGTTTTGCCCTACGTGGCTGTCTGCTTTA
TTGGCCGCTGATTGTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTCCTCGACGTCGTCGGAGGTATCTCCGGCAGCACCTCCTGAAAAGGGTTGTCGAAGTGGGAGAAGTCCGCCGGTGGAGAAGGAGGAAGCTGCTGGAGATTGTCT
GGAAGTAGTGAACATCATCAATAAATCGTCCATGGAGCTCACCGAAGTTTCTCTAATTGTTGAAGACATATGGAAAGAGGTGGAATCCTTGCCAGTTGAAGGATTCAAGC
ATCTGCCGAGGAAGGCTAATGGAGTCGCTCATGGGATAGCAAGGAGAGCGTGCGAAGAGGGATTCTCGTCTTCGTGGAACCAGTTTTGCCCTACGTGGCTGTCTGCTTTA
TTGGCCGCTGATTGTATTTAA
Protein sequenceShow/hide protein sequence
MCSSTSSEVSPAAPPEKGCRSGRSPPVEKEEAAGDCLEVVNIINKSSMELTEVSLIVEDIWKEVESLPVEGFKHLPRKANGVAHGIARRACEEGFSSSWNQFCPTWLSAL
LAADCI