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Moc05g10530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g10530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr5:8255438..8260342
RNA-Seq ExpressionMoc05g10530
SyntenyMoc05g10530
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3453187.1 Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Gossypium australe]2.2e-1441.48Show/hide
Query:  NSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAE-------SESYDEETI
        N+   K   G+++ C+Y HK  H KR+CRKL  + Q+ Q A+ A +S  + + VTIPAEE+A   Q QE ++  SS+ ITA+ E       S+   ++ I
Subjt:  NSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAE-------SESYDEETI

Query:  GKGRESNGLYTFDTQILTTTVCTRVLSLFQEHCRL
         KG ES+GLY  DTQ   + VC   ++ F+EHCRL
Subjt:  GKGRESNGLYTFDTQILTTTVCTRVLSLFQEHCRL

XP_022137992.1 uncharacterized protein LOC111009263 isoform X1 [Momordica charantia]3.9e-1952.31Show/hide
Query:  KSQLVLSSQSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEEF
        +SQ+V SSQSNS LVGR TN Y GN  + +    N QR NS++ K N G+V+ C+YC+K GHTK + RKL NKG+R Q       S++   L+ I ++EF
Subjt:  KSQLVLSSQSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEEF

Query:  AMFQQYQESSMASSSNPITAIAESESYDEE
        A FQQYQ+S  ASSSNP   I ES S DEE
Subjt:  AMFQQYQESSMASSSNPITAIAESESYDEE

XP_038884286.1 uncharacterized protein LOC120075167 [Benincasa hispida]9.9e-1558.62Show/hide
Query:  KSNSGDVITCNYCHKFGHTKRECRKLFNKGQRI--QSAYVAHTSNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAESESYDE
        +SN G V+ C YCHK GHTK ECR+L NK QR+   SA+VA T +N  + +TI AEEFA FQQYQE   ASSS PI  IAE+  Y+E
Subjt:  KSNSGDVITCNYCHKFGHTKRECRKLFNKGQRI--QSAYVAHTSNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAESESYDE

XP_038886884.1 uncharacterized protein LOC120077091 [Benincasa hispida]1.2e-2055.56Show/hide
Query:  KSQLVLSSQSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQ--SAYVAHTSNNAGELVTIPAE
        K+Q V SS S+SAL+GR TN Y GN         N+ + + +  +SN G V+ C YCHK GHTKRECRKL +KGQR+   S +VA T +N  + +TI AE
Subjt:  KSQLVLSSQSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQ--SAYVAHTSNNAGELVTIPAE

Query:  EFAMFQQYQESSMASSSNPITAIAES
        EFA FQQYQES  ASSS PITAIAE+
Subjt:  EFAMFQQYQESSMASSSNPITAIAES

XP_038888980.1 uncharacterized protein LOC120078744 isoform X1 [Benincasa hispida]1.8e-1660.92Show/hide
Query:  KSNSGDVITCNYCHKFGHTKRECRKLFNKGQR--IQSAYVAHTSNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAESESYDE
        +SN G V+ C YCHK G+TKRECR+L NKGQR  + SA+VA T +N  + + I A EFA FQQYQES  ASSS PIT I E+ SYDE
Subjt:  KSNSGDVITCNYCHKFGHTKRECRKLFNKGQR--IQSAYVAHTSNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAESESYDE

TrEMBL top hitse value%identityAlignment
A0A438G2L4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-1433.95Show/hide
Query:  KSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHT-----SNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAESES-------------
        + N    I C YCH+ GHTK+ CRKL N+ +RIQ+A VA +     S+++ ++VT+ AEEF+ + QYQ++  AS+  P++A+AES S             
Subjt:  KSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHT-----SNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAESES-------------

Query:  ---------------YDEETIGKGRESNGLYTFDTQILTTTVCTRVLSLFQEHCRLDSCPIP
                         + T GKG  S+GLY  D  +     C    S  + HCRL    +P
Subjt:  ---------------YDEETIGKGRESNGLYTFDTQILTTTVCTRVLSLFQEHCRLDSCPIP

A0A5A7T406 Copia protein6.9e-1434.52Show/hide
Query:  QSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRK-LFNKGQRIQSAYVAHTSNNAGELVTIPAEEFAMFQQYQ
        QS+++L+ ++ N  +     GN   ++T+ ++   P S     I CNYC K  H KR+CRK L+   Q+ Q A +A T +     +TI A E A  Q YQ
Subjt:  QSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRK-LFNKGQRIQSAYVAHTSNNAGELVTIPAEEFAMFQQYQ

Query:  ESSMASSSN-PITA----------IAESESYDEET---IGKGRESNGLYTFDTQILTTTVCTRVLSLFQ-EHCRLDSCPIPAASSSVDPGTSDDLLI
        +S  ASSS+ PI +          +  S  +D  T   IGKG ES GLY FD Q+     C  + S F+ +   L+  P  ++ SS   G  D+L I
Subjt:  ESSMASSSN-PITA----------IAESESYDEET---IGKGRESNGLYTFDTQILTTTVCTRVLSLFQ-EHCRLDSCPIPAASSSVDPGTSDDLLI

A0A5B6U8P4 Cysteine-rich RLK (RECEPTOR-like protein kinase) 81.1e-1441.48Show/hide
Query:  NSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAE-------SESYDEETI
        N+   K   G+++ C+Y HK  H KR+CRKL  + Q+ Q A+ A +S  + + VTIPAEE+A   Q QE ++  SS+ ITA+ E       S+   ++ I
Subjt:  NSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEEFAMFQQYQESSMASSSNPITAIAE-------SESYDEETI

Query:  GKGRESNGLYTFDTQILTTTVCTRVLSLFQEHCRL
         KG ES+GLY  DTQ   + VC   ++ F+EHCRL
Subjt:  GKGRESNGLYTFDTQILTTTVCTRVLSLFQEHCRL

A0A5D3E5M8 Copia protein7.6e-1335.47Show/hide
Query:  QSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRK-LFNKGQRIQSAYVAHTSNNAGELVTIPAEEFAMFQQYQ
        QS+++L+ ++ N  +     GN   ++T+ ++   P S     I CNYC K  H KR+CRK L+   Q+ Q A +A T +     +TI A E A  Q YQ
Subjt:  QSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRK-LFNKGQRIQSAYVAHTSNNAGELVTIPAEEFAMFQQYQ

Query:  ESSMASSSN-PITA----------IAESESYDEET---IGKGRESNGLYTFDTQILTTTVCTRVLSLFQEHC
        +S  ASSS+ PI +          +  S  +D  T   IGKG ES GLY FD Q+     C  + S F+  C
Subjt:  ESSMASSSN-PITA----------IAESESYDEET---IGKGRESNGLYTFDTQILTTTVCTRVLSLFQEHC

A0A6J1C9T8 uncharacterized protein LOC111009263 isoform X11.9e-1952.31Show/hide
Query:  KSQLVLSSQSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEEF
        +SQ+V SSQSNS LVGR TN Y GN  + +    N QR NS++ K N G+V+ C+YC+K GHTK + RKL NKG+R Q       S++   L+ I ++EF
Subjt:  KSQLVLSSQSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEEF

Query:  AMFQQYQESSMASSSNPITAIAESESYDEE
        A FQQYQ+S  ASSSNP   I ES S DEE
Subjt:  AMFQQYQESSMASSSNPITAIAESESYDEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCAAAGATCAATTACTCTCTGGTTTGGAAGTCACAACTCGTCCTGTCATCTCAGTCTAATAGTGCTTTGGTTGGACGTAGTACAAATGCATACTCAGGTAATAC
CTACCAAGGAAATTCCACGACTTTGAATACTCAACGATGGAATTCTAGTGCTCCAAAATCTAATTCAGGAGATGTCATTACATGCAATTATTGTCATAAGTTTGGACATA
CAAAGCGAGAATGCAGAAAGCTATTTAATAAAGGTCAAAGAATACAGTCTGCATATGTTGCACATACTTCTAATAATGCTGGTGAGTTAGTTACGATTCCTGCGGAAGAG
TTTGCTATGTTCCAACAGTATCAAGAGTCATCGATGGCATCGTCCTCTAATCCGATTACAGCAATCGCTGAATCAGAATCTTACGATGAAGAAACTATTGGTAAAGGGCG
TGAATCCAATGGCCTCTACACATTTGATACACAAATCCTTACAACTACTGTTTGCACTCGAGTACTATCTCTTTTCCAAGAACATTGTCGTTTAGACTCATGCCCTATAC
CAGCAGCTTCCTCGTCCGTGGATCCTGGAACAAGTGATGACCTTCTTATTGCTCTTCGAAAAGGTGGTGTTTGGCCCACGGGTTCGGAATCAGTAGCATGGATTTGTGTA
ACCTGGGGGTTTGATGTTGGGGTGTTGTACAGCCTAGGTTTGTGTAGCCTATGTTTGGGGTGCAGGGTTGGGTACCCTGGCTTTATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGCCAAAGATCAATTACTCTCTGGTTTGGAAGTCACAACTCGTCCTGTCATCTCAGTCTAATAGTGCTTTGGTTGGACGTAGTACAAATGCATACTCAGGTAATAC
CTACCAAGGAAATTCCACGACTTTGAATACTCAACGATGGAATTCTAGTGCTCCAAAATCTAATTCAGGAGATGTCATTACATGCAATTATTGTCATAAGTTTGGACATA
CAAAGCGAGAATGCAGAAAGCTATTTAATAAAGGTCAAAGAATACAGTCTGCATATGTTGCACATACTTCTAATAATGCTGGTGAGTTAGTTACGATTCCTGCGGAAGAG
TTTGCTATGTTCCAACAGTATCAAGAGTCATCGATGGCATCGTCCTCTAATCCGATTACAGCAATCGCTGAATCAGAATCTTACGATGAAGAAACTATTGGTAAAGGGCG
TGAATCCAATGGCCTCTACACATTTGATACACAAATCCTTACAACTACTGTTTGCACTCGAGTACTATCTCTTTTCCAAGAACATTGTCGTTTAGACTCATGCCCTATAC
CAGCAGCTTCCTCGTCCGTGGATCCTGGAACAAGTGATGACCTTCTTATTGCTCTTCGAAAAGGTGGTGTTTGGCCCACGGGTTCGGAATCAGTAGCATGGATTTGTGTA
ACCTGGGGGTTTGATGTTGGGGTGTTGTACAGCCTAGGTTTGTGTAGCCTATGTTTGGGGTGCAGGGTTGGGTACCCTGGCTTTATGTAG
Protein sequenceShow/hide protein sequence
MWPKINYSLVWKSQLVLSSQSNSALVGRSTNAYSGNTYQGNSTTLNTQRWNSSAPKSNSGDVITCNYCHKFGHTKRECRKLFNKGQRIQSAYVAHTSNNAGELVTIPAEE
FAMFQQYQESSMASSSNPITAIAESESYDEETIGKGRESNGLYTFDTQILTTTVCTRVLSLFQEHCRLDSCPIPAASSSVDPGTSDDLLIALRKGGVWPTGSESVAWICV
TWGFDVGVLYSLGLCSLCLGCRVGYPGFM