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Moc05g11030 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g11030
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr5:8651479..8656382
RNA-Seq ExpressionMoc05g11030
SyntenyMoc05g11030
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]3.6e-1456.7Show/hide
Query:  SASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLDKVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYD
        SAS VDHLPLKTL I+PSLELALYALVKYSSQ NDLQLLHGNHS                         E   +    RILGS+ SSL L  SDYYD
Subjt:  SASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLDKVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYD
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]1.7e-4090Show/hide
Query:  SASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLDKVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYDYRV
        SASC+ HLPLKTL ILPSLELA+YALVKYSSQ NDLQLL GNHSGLAGRTT DKVVA+ALRV+ELIDYLEIIGITTQCRILGSDGSSLAL ASDYYDYRV
Subjt:  SASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLDKVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYDYRV
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like1.7e-1456.7Show/hide
Query:  SASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLDKVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYD
        SAS VDHLPLKTL I+PSLELALYALVKYSSQ NDLQLLHGNHS                         E   +    RILGS+ SSL L  SDYYD
Subjt:  SASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLDKVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYD
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein8.3e-4190Show/hide
Query:  SASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLDKVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYDYRV
        SASC+ HLPLKTL ILPSLELA+YALVKYSSQ NDLQLL GNHSGLAGRTT DKVVA+ALRV+ELIDYLEIIGITTQCRILGSDGSSLAL ASDYYDYRV
Subjt:  SASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLDKVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYDYRV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCCCCTGAAGGGTCCGAGATAAGGATTTTGGTTCCGAAGTCGACTGAGCGTAGGGAAGGTGTTAGCACCCTACGACACCCGTTCGAAAACGAGTGGGTCGCTGG
ACTCTTGGTCGTCGTCAGTCAATCACCGGAGGATGGTCTCAAGACAGCAATGGAGGTCGTGAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGTCATCCTGC
CTTCACTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTCGAATGACCTACAGCTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGAT
AAGGTGGTTGCAATGGCTCTACGGGTACAGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTCAGTGTAGGATATTGGGATCGGATGGAAGCTCTCTCGCTTT
ATTTGCCTCCGACTACTATGATTATCGAGTAATGTTGACAAATTTAGTTGTGGGTCATACTGTAGAGCCAATGAGTTTATGGGTACTGTATACGGATTATTGTATATCGT
AG
mRNA sequenceShow/hide mRNA sequence
ATGTCATCCCCTGAAGGGTCCGAGATAAGGATTTTGGTTCCGAAGTCGACTGAGCGTAGGGAAGGTGTTAGCACCCTACGACACCCGTTCGAAAACGAGTGGGTCGCTGG
ACTCTTGGTCGTCGTCAGTCAATCACCGGAGGATGGTCTCAAGACAGCAATGGAGGTCGTGAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGTCATCCTGC
CTTCACTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTCGAATGACCTACAGCTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGAT
AAGGTGGTTGCAATGGCTCTACGGGTACAGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTCAGTGTAGGATATTGGGATCGGATGGAAGCTCTCTCGCTTT
ATTTGCCTCCGACTACTATGATTATCGAGTAATGTTGACAAATTTAGTTGTGGGTCATACTGTAGAGCCAATGAGTTTATGGGTACTGTATACGGATTATTGTATATCGT
AG
Protein sequenceShow/hide protein sequence
MSSPEGSEIRILVPKSTERREGVSTLRHPFENEWVAGLLVVVSQSPEDGLKTAMEVVSASCVDHLPLKTLVILPSLELALYALVKYSSQSNDLQLLHGNHSGLAGRTTLD
KVVAMALRVQELIDYLEIIGITTQCRILGSDGSSLALFASDYYDYRVMLTNLVVGHTVEPMSLWVLYTDYCIS