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Moc05g12260 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g12260
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:9559290..9560411
RNA-Seq ExpressionMoc05g12260
SyntenyMoc05g12260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137317.1 uncharacterized protein LOC111008813 [Momordica charantia]2.2e-2056.31Show/hide
Query:  RSEVDLLRDQFQKEIEDLKRRCRPVD-PHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR
        R E D LR Q   ++E LK +C   + P    +  E PF   +L+APIPP+FKAP +  YDGS DP  YVEVFE  MDF AASDA+K RAF+IAL GSAR
Subjt:  RSEVDLLRDQFQKEIEDLKRRCRPVD-PHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR

Query:  LWY
        LWY
Subjt:  LWY

XP_022141796.1 uncharacterized protein LOC111012081 [Momordica charantia]1.3e-2057.28Show/hide
Query:  RSEVDLLRDQFQKEIEDLKRRCRPVD-PHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR
        R E D LR Q   + E LK +C   + P    +  E PF   +L+APIPP+FKAP +  YDGS DP  YVEVFEG MDF A SDA+K RAFQIAL GSAR
Subjt:  RSEVDLLRDQFQKEIEDLKRRCRPVD-PHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR

Query:  LWY
        LWY
Subjt:  LWY

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]3.7e-2055.88Show/hide
Query:  RSEVDLLRDQFQKEIEDLKRRC-RPVDPHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR
        R E DL++ +F +++E LK RC +   P    +  E PF   I++APIPP+FK P M  YDGS DP  YVEVFEG MDF AA+DA+K  AFQIAL GSAR
Subjt:  RSEVDLLRDQFQKEIEDLKRRC-RPVDPHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR

Query:  LW
        LW
Subjt:  LW

XP_022156542.1 uncharacterized protein LOC111023421 [Momordica charantia]1.3e-2056.31Show/hide
Query:  RSEVDLLRDQFQKEIEDLKRRCRPVDPH-RVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR
        R E D LR +   ++E LK +C   D      +  E PF   +L+APIPP+FKAP +  YDG+ DP  YVEVFEG MDF AASDA+K RAFQIAL GSAR
Subjt:  RSEVDLLRDQFQKEIEDLKRRCRPVDPH-RVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR

Query:  LWY
        LWY
Subjt:  LWY

XP_022158652.1 uncharacterized protein LOC111025109 [Momordica charantia]1.5e-2155.17Show/hide
Query:  QERSSH--ADHSFRSEVDLLRDQFQKEIEDLKRRCRPVDPH-RVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMK
        Q  SSH  A    R E D LR +   ++E LK +C   D      +  EPPF   +L+APIPP+FKAP +  YDG+ DP  YVEVFEG MDF AASDA+K
Subjt:  QERSSH--ADHSFRSEVDLLRDQFQKEIEDLKRRCRPVDPH-RVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMK

Query:  YRAFQIALEGSARLWY
         RAFQIAL GSARLWY
Subjt:  YRAFQIALEGSARLWY

TrEMBL top hitse value%identityAlignment
A0A6J1C7X5 uncharacterized protein LOC1110088131.1e-2056.31Show/hide
Query:  RSEVDLLRDQFQKEIEDLKRRCRPVD-PHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR
        R E D LR Q   ++E LK +C   + P    +  E PF   +L+APIPP+FKAP +  YDGS DP  YVEVFE  MDF AASDA+K RAF+IAL GSAR
Subjt:  RSEVDLLRDQFQKEIEDLKRRCRPVD-PHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR

Query:  LWY
        LWY
Subjt:  LWY

A0A6J1CKB3 uncharacterized protein LOC1110120816.2e-2157.28Show/hide
Query:  RSEVDLLRDQFQKEIEDLKRRCRPVD-PHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR
        R E D LR Q   + E LK +C   + P    +  E PF   +L+APIPP+FKAP +  YDGS DP  YVEVFEG MDF A SDA+K RAFQIAL GSAR
Subjt:  RSEVDLLRDQFQKEIEDLKRRCRPVD-PHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR

Query:  LWY
        LWY
Subjt:  LWY

A0A6J1DPC9 uncharacterized protein LOC1110222801.8e-2055.88Show/hide
Query:  RSEVDLLRDQFQKEIEDLKRRC-RPVDPHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR
        R E DL++ +F +++E LK RC +   P    +  E PF   I++APIPP+FK P M  YDGS DP  YVEVFEG MDF AA+DA+K  AFQIAL GSAR
Subjt:  RSEVDLLRDQFQKEIEDLKRRC-RPVDPHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR

Query:  LW
        LW
Subjt:  LW

A0A6J1DS95 uncharacterized protein LOC1110234216.2e-2156.31Show/hide
Query:  RSEVDLLRDQFQKEIEDLKRRCRPVDPH-RVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR
        R E D LR +   ++E LK +C   D      +  E PF   +L+APIPP+FKAP +  YDG+ DP  YVEVFEG MDF AASDA+K RAFQIAL GSAR
Subjt:  RSEVDLLRDQFQKEIEDLKRRCRPVDPH-RVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMKYRAFQIALEGSAR

Query:  LWY
        LWY
Subjt:  LWY

A0A6J1DXR9 uncharacterized protein LOC1110251097.4e-2255.17Show/hide
Query:  QERSSH--ADHSFRSEVDLLRDQFQKEIEDLKRRCRPVDPH-RVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMK
        Q  SSH  A    R E D LR +   ++E LK +C   D      +  EPPF   +L+APIPP+FKAP +  YDG+ DP  YVEVFEG MDF AASDA+K
Subjt:  QERSSH--ADHSFRSEVDLLRDQFQKEIEDLKRRCRPVDPH-RVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDAMK

Query:  YRAFQIALEGSARLWY
         RAFQIAL GSARLWY
Subjt:  YRAFQIALEGSARLWY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCAAACCCGCTCCCAGCAGTCACGATCTCAACTTTTGCCTATTCGCTCTCCGATGAGGGATGCTGCGGGGGTGGTTAAGGAGAATGGAGGTCGGCCGGCCACATC
CGATCCAATAGCAGTCCGGGACTTCCACCTCGCCTCAGATCAGTTCCCGTCACTGCAACCTCAGAGGAACGGGTTGCCGCCCCGTGCACCTTGCCTCCACGGTTGGGGAA
ACACAGGTGCGCGCTCCGGGGCAAGTGCCGGGGCAGGCGTGGACCCCGTCATTGTAGCCAACGTGATCGTCGAGCTCACGGAAGTCAAGGCGAGGCTCGAGGCGGTCGAG
AGAGGCAGCGAGGTGTCCAGCTCTTCCGTCTCCAGGGATCCCATCCGAGGAAAGGGACCGATGCATCCGACCCAAAGAACGGAGTATCAGTTCCGACCTCGCAGGGAGGC
CCGAGCTGGAGCACCCTCGCGAAAGCCAGAACGGGTGAGGACAGGCAGTGTCGTGGGAGCACAGGTGCGCGACCACCCTCGGCAGGACGATCGGGTCGAGGGTCGGCGCC
CGAGGATCCGACCAATCCGAACTCCCTTGGCATCTTTCGATAACTCCAACGCCCATCAGGGCCGAGGTGCCGAAACGCCGAGGCGACGAGTAGTGGCACCCGAAGATCGG
GAGTATTTGGTTGACGATGAGGAGGAAAGCCCAGTGGTCGACGTTCAAGAGAGGTCCTCCCACGCTGACCATTCGTTTCGGTCTGAAGTAGACCTCCTCCGGGATCAGTT
TCAGAAGGAGATAGAAGATCTTAAGCGGCGGTGCAGGCCTGTGGACCCGCATCGCGTGGCCGAGCAAAAGGAACCGCCTTTCTTCCAAGCGATCCTGGACGCACCTATTC
CACCGAGGTTCAAGGCTCCGGTCATGAGTTCTTACGACGGGTCTGGAGATCCGATCTCCTACGTAGAGGTGTTCGAGGGGAAGATGGATTTCCTGGCCGCGAGCGACGCC
ATGAAGTACCGAGCATTTCAAATAGCATTGGAAGGCTCAGCAAGATTGTGGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCAAACCCGCTCCCAGCAGTCACGATCTCAACTTTTGCCTATTCGCTCTCCGATGAGGGATGCTGCGGGGGTGGTTAAGGAGAATGGAGGTCGGCCGGCCACATC
CGATCCAATAGCAGTCCGGGACTTCCACCTCGCCTCAGATCAGTTCCCGTCACTGCAACCTCAGAGGAACGGGTTGCCGCCCCGTGCACCTTGCCTCCACGGTTGGGGAA
ACACAGGTGCGCGCTCCGGGGCAAGTGCCGGGGCAGGCGTGGACCCCGTCATTGTAGCCAACGTGATCGTCGAGCTCACGGAAGTCAAGGCGAGGCTCGAGGCGGTCGAG
AGAGGCAGCGAGGTGTCCAGCTCTTCCGTCTCCAGGGATCCCATCCGAGGAAAGGGACCGATGCATCCGACCCAAAGAACGGAGTATCAGTTCCGACCTCGCAGGGAGGC
CCGAGCTGGAGCACCCTCGCGAAAGCCAGAACGGGTGAGGACAGGCAGTGTCGTGGGAGCACAGGTGCGCGACCACCCTCGGCAGGACGATCGGGTCGAGGGTCGGCGCC
CGAGGATCCGACCAATCCGAACTCCCTTGGCATCTTTCGATAACTCCAACGCCCATCAGGGCCGAGGTGCCGAAACGCCGAGGCGACGAGTAGTGGCACCCGAAGATCGG
GAGTATTTGGTTGACGATGAGGAGGAAAGCCCAGTGGTCGACGTTCAAGAGAGGTCCTCCCACGCTGACCATTCGTTTCGGTCTGAAGTAGACCTCCTCCGGGATCAGTT
TCAGAAGGAGATAGAAGATCTTAAGCGGCGGTGCAGGCCTGTGGACCCGCATCGCGTGGCCGAGCAAAAGGAACCGCCTTTCTTCCAAGCGATCCTGGACGCACCTATTC
CACCGAGGTTCAAGGCTCCGGTCATGAGTTCTTACGACGGGTCTGGAGATCCGATCTCCTACGTAGAGGTGTTCGAGGGGAAGATGGATTTCCTGGCCGCGAGCGACGCC
ATGAAGTACCGAGCATTTCAAATAGCATTGGAAGGCTCAGCAAGATTGTGGTACTGA
Protein sequenceShow/hide protein sequence
MAQTRSQQSRSQLLPIRSPMRDAAGVVKENGGRPATSDPIAVRDFHLASDQFPSLQPQRNGLPPRAPCLHGWGNTGARSGASAGAGVDPVIVANVIVELTEVKARLEAVE
RGSEVSSSSVSRDPIRGKGPMHPTQRTEYQFRPRREARAGAPSRKPERVRTGSVVGAQVRDHPRQDDRVEGRRPRIRPIRTPLASFDNSNAHQGRGAETPRRRVVAPEDR
EYLVDDEEESPVVDVQERSSHADHSFRSEVDLLRDQFQKEIEDLKRRCRPVDPHRVAEQKEPPFFQAILDAPIPPRFKAPVMSSYDGSGDPISYVEVFEGKMDFLAASDA
MKYRAFQIALEGSARLWY