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Moc05g12370 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g12370
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationchr5:9613457..9616068
RNA-Seq ExpressionMoc05g12370
SyntenyMoc05g12370
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065903.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0635.85Show/hide
Query:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRN
        G+ D R NP +EG+ND  +++      + +E +    ++    Q Q+N E IIM QG +T+ARAKR ++ LN   QA+     +EL   +L++    PR 
Subjt:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRN

Query:  FMNLKI
         MNL+I
Subjt:  FMNLKI

TYK15114.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]4.5e-0635.85Show/hide
Query:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRN
        G+ D R NP +EG+ND  +++      + +E +    ++    Q Q+N E IIM QG +T+ARAKR ++ LN   QA+     +EL   +L++    PR 
Subjt:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRN

Query:  FMNLKI
         MNL+I
Subjt:  FMNLKI

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]8.5e-0550Show/hide
Query:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPP----RVMDDHLLYRENEFE-EGDLDW
        MAN   EGNISD R RE  +  +ERMIR+M+ ++ER+ RLE QNQA  R+PP    RVMD      E+E+E +G   W
Subjt:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPP----RVMDDHLLYRENEFE-EGDLDW

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]8.5e-0538.38Show/hide
Query:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPPRVMDDHLLYRENEFEEGDLDWRMNPSKEGKNDIEMSDHGVHEESLQE
        M N ++  NI+D R+RE QQR MER+IR ++++++R+ RLEIQNQA +RIP           +N     D     NP   G   +   DHG    +LQ+
Subjt:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPPRVMDDHLLYRENEFEEGDLDWRMNPSKEGKNDIEMSDHGVHEESLQE

XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]8.5e-0538.38Show/hide
Query:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPPRVMDDHLLYRENEFEEGDLDWRMNPSKEGKNDIEMSDHGVHEESLQE
        M N ++  NI+D R+RE QQR MER+IR ++++++R+ RLEIQNQA +RIP           +N     D     NP   G   +   DHG    +LQ+
Subjt:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPPRVMDDHLLYRENEFEEGDLDWRMNPSKEGKNDIEMSDHGVHEESLQE

TrEMBL top hitse value%identityAlignment
A0A5A7VCL9 Reverse transcriptase2.2e-0635.85Show/hide
Query:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRN
        G+ D R NP +EG+ND  +++      + +E +    ++    Q Q+N E IIM QG +T+ARAKR ++ LN   QA+     +EL   +L++    PR 
Subjt:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRN

Query:  FMNLKI
         MNL+I
Subjt:  FMNLKI

A0A5D3CW05 Zinc finger, CCHC-type2.2e-0635.85Show/hide
Query:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRN
        G+ D R NP +EG+ND  +++      + +E +    ++    Q Q+N E IIM QG +T+ARAKR ++ LN   QA+     +EL   +L++    PR 
Subjt:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRN

Query:  FMNLKI
         MNL+I
Subjt:  FMNLKI

A0A5D3D7R5 Transposon Ty3-G Gag-Pol polyprotein5.9e-0441.67Show/hide
Query:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLN
        G+ D R NP +EG+ND  ++       + +E +    ++    QSQ+N E IIM QG +T+ARAKRLQ+ LN
Subjt:  GDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLSSNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLN

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241154.1e-0550Show/hide
Query:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPP----RVMDDHLLYRENEFE-EGDLDW
        MAN   EGNISD R RE  +  +ERMIR+M+ ++ER+ RLE QNQA  R+PP    RVMD      E+E+E +G   W
Subjt:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPP----RVMDDHLLYRENEFE-EGDLDW

A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699485.3e-0554.9Show/hide
Query:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIP
        M N +N  +I+D R+RE QQR MER+IR ++++++R+ RLEIQNQA +RIP
Subjt:  MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATGAAGAAAATGAAGGTAACATATCAGATGGTAGGATGAGAGAGACCCAACAAAGAGTTATGGAGCGAATGATTCGTACCATGGATGACATATCAGAA
CGAATGCACAGGTTGGAGATTCAAAACCAAGCGCATGAGAGGATACCACCACGTGTTATGGATGACCATCTTTTATATCGAGAGAATGAATTTGAGGAAGGTGAT
TTGGATTGGAGGATGAATCCTTCCAAAGAAGGGAAGAATGATATAGAAATGAGTGATCACGGAGTGCATGAGGAAAGCCTACAAGAGGAACAAGCTCAACTCAGC
TCAAATGAAGCTTATGCTCAAAGTCAATCCAATCATGAGCCAATCATTATGCCACAAGGTCCAATCACAAGAGCTAGAGCTAAAAGACTACAAGAAGGATTGAAT
GGTCACTTTCAAGCTAAGGTTCTCACACTTGGTGAAGAATTGCATCCCTTCAAGCTTGAAAAGATATCTTGTCCTCCAAGAAATTTCATGAATCTAAAAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAATGAAGAAAATGAAGGTAACATATCAGATGGTAGGATGAGAGAGACCCAACAAAGAGTTATGGAGCGAATGATTCGTACCATGGATGACATATCAGAA
CGAATGCACAGGTTGGAGATTCAAAACCAAGCGCATGAGAGGATACCACCACGTGTTATGGATGACCATCTTTTATATCGAGAGAATGAATTTGAGGAAGGTGAT
TTGGATTGGAGGATGAATCCTTCCAAAGAAGGGAAGAATGATATAGAAATGAGTGATCACGGAGTGCATGAGGAAAGCCTACAAGAGGAACAAGCTCAACTCAGC
TCAAATGAAGCTTATGCTCAAAGTCAATCCAATCATGAGCCAATCATTATGCCACAAGGTCCAATCACAAGAGCTAGAGCTAAAAGACTACAAGAAGGATTGAAT
GGTCACTTTCAAGCTAAGGTTCTCACACTTGGTGAAGAATTGCATCCCTTCAAGCTTGAAAAGATATCTTGTCCTCCAAGAAATTTCATGAATCTAAAAATCTAG
Protein sequenceShow/hide protein sequence
MANEENEGNISDGRMRETQQRVMERMIRTMDDISERMHRLEIQNQAHERIPPRVMDDHLLYRENEFEEGDLDWRMNPSKEGKNDIEMSDHGVHEESLQEEQAQLS
SNEAYAQSQSNHEPIIMPQGPITRARAKRLQEGLNGHFQAKVLTLGEELHPFKLEKISCPPRNFMNLKI