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Moc05g12960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g12960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr5:10000100..10004913
RNA-Seq ExpressionMoc05g12960
SyntenyMoc05g12960
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066461.1 uncharacterized protein E6C27_scaffold21G005620 [Cucumis melo var. makuwa]3.7e-3458.27Show/hide
Query:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDS
        D N P  +EDMYH+AIKIE QL++E+EHSK NE MQ +GKF A ++V+ ESSN K  E  KEVREKT+S+ CWKCKGFGHMSK+C+NK VMV+RNGV+DS
Subjt:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDS

Query:  NDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH
         D CE+ DA+ +E+ +  V DE+IE+    S   + LL+
Subjt:  NDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH

KAA0066461.1 uncharacterized protein E6C27_scaffold21G005620 [Cucumis melo var. makuwa]3.4e-0371.11Show/hide
Query:  VPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD
        VP+V  DPN+ ILQAIQGM+E+M E+RQERRAQQQRE R  QED+
Subjt:  VPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD

KAA0066461.1 uncharacterized protein E6C27_scaffold21G005620 [Cucumis melo var. makuwa]1.9e-3356.12Show/hide
Query:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDS
        D NPP  +EDMYH+AIKIE QL++E+E SK NE MQ +GKF   ++V+ ESSN K  E  KEVREKT+S+ CWKCKGFGHMSK+C+NK VMV+RNG++DS
Subjt:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDS

Query:  NDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH
         D CE+ DA+ +E+ +  V DE+IE+    S   + +L+
Subjt:  NDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH

XP_022153198.1 uncharacterized protein LOC111020753 [Momordica charantia]2.5e-3833.95Show/hide
Query:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED-----------------------------------------------------
        +DGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED                                                     
Subjt:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKF
                                             D NPPPYLEDMYH+ +KIEDQL++E+E+SK              W        NE +QPK KF
Subjt:  -------------------------------------DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKF

Query:  GAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDE
         A KR++ ESSN K NE PKEVREKT+S+ CWKCKGFGHMSK+CVNK VMVIRNGVVDS+D CE++D +F+E  + +++E
Subjt:  GAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDE

XP_022158838.1 uncharacterized protein LOC111025303 [Momordica charantia]7.1e-4136.99Show/hide
Query:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED-----------------------------------------------------
        +DGVPQVPQDPN VILQAIQGMMEMMMEDRQERRAQQQREERALQED                                                     
Subjt:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKC
           D NPP YLEDMYH+A+KIEDQ ++E+E+SK              W        NE MQPKGKF A KR++ ESSN K NE PKEVRE T+S+ CWKC
Subjt:  ---DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKC

Query:  KGFGHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDE
        KGFGHMSK+CVNK VMVIRNGVVDS+D CE++D  F+E  + +++E
Subjt:  KGFGHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDE

XP_023520950.1 uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo]6.8e-3653.75Show/hide
Query:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGF
        D NPPPYLEDMYH+A+KIEDQL++E+EHSK              W        NE M PK KF A KRV+AESS  K NE  K V+EK++S+ CWKCKGF
Subjt:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGF

Query:  GHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDEFIEQDR----KDSDFDK
        GHMSKECVNK+VMVIRNG++DS+D CE +D++  E+  A+ DE++E+ +    K +DF++
Subjt:  GHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDEFIEQDR----KDSDFDK

TrEMBL top hitse value%identityAlignment
A0A5A7VLF9 CCHC-type domain-containing protein1.8e-3458.27Show/hide
Query:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDS
        D N P  +EDMYH+AIKIE QL++E+EHSK NE MQ +GKF A ++V+ ESSN K  E  KEVREKT+S+ CWKCKGFGHMSK+C+NK VMV+RNGV+DS
Subjt:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDS

Query:  NDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH
         D CE+ DA+ +E+ +  V DE+IE+    S   + LL+
Subjt:  NDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH

A0A5A7VLF9 CCHC-type domain-containing protein1.7e-0371.11Show/hide
Query:  VPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD
        VP+V  DPN+ ILQAIQGM+E+M E+RQERRAQQQRE R  QED+
Subjt:  VPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD

A0A5A7VLF9 CCHC-type domain-containing protein9.0e-3456.12Show/hide
Query:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDS
        D NPP  +EDMYH+AIKIE QL++E+E SK NE MQ +GKF   ++V+ ESSN K  E  KEVREKT+S+ CWKCKGFGHMSK+C+NK VMV+RNG++DS
Subjt:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDS

Query:  NDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH
         D CE+ DA+ +E+ +  V DE+IE+    S   + +L+
Subjt:  NDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH

A0A5D3C8C6 CCHC-type domain-containing protein4.2e-3150.31Show/hide
Query:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGF
        D NPP  +EDMYH+AIKIE QL++E+E SK              W        NE MQ +GKF A ++V+ ESSN K  E  KEVREKT+S+ CWKCKGF
Subjt:  DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGF

Query:  GHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH
        GHMSK+C+NK VMV+RNGV+DS D CE+ DA+ +E+ +  V DE+IE+    S   + +L+
Subjt:  GHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHV-DEFIEQDRKDSDFDKTLLH

A0A6J1DGU9 uncharacterized protein LOC1110207531.2e-3833.95Show/hide
Query:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED-----------------------------------------------------
        +DGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED                                                     
Subjt:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKF
                                             D NPPPYLEDMYH+ +KIEDQL++E+E+SK              W        NE +QPK KF
Subjt:  -------------------------------------DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKF

Query:  GAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDE
         A KR++ ESSN K NE PKEVREKT+S+ CWKCKGFGHMSK+CVNK VMVIRNGVVDS+D CE++D +F+E  + +++E
Subjt:  GAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDE

A0A6J1DX75 uncharacterized protein LOC1110253033.4e-4136.99Show/hide
Query:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED-----------------------------------------------------
        +DGVPQVPQDPN VILQAIQGMMEMMMEDRQERRAQQQREERALQED                                                     
Subjt:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQED-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKC
           D NPP YLEDMYH+A+KIEDQ ++E+E+SK              W        NE MQPKGKF A KR++ ESSN K NE PKEVRE T+S+ CWKC
Subjt:  ---DENPPPYLEDMYHHAIKIEDQLRKEEEHSK--------------W--------NEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKC

Query:  KGFGHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDE
        KGFGHMSK+CVNK VMVIRNGVVDS+D CE++D  F+E  + +++E
Subjt:  KGFGHMSKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTATACCGAGTTGTTATTCAAATTATTTCAAGGTAATCTATTAGCTCCTGTACCCGTAGAGCCATTACAACCACCTTATCCAAAGTGGTACAACCAGCAT
GTTCATTGTGATTACCATGCAGGAGCTATAGGTCATTCAACTGAGAACTGTACTTCACTGAAGCATAAAATGCAAGTTATAATGAAGGCAGAATGGCTAAAGTTT
TCAAAGGAAGATGGAGCAATTATTACAAGAAAGGCAAGGAAGATTCAAGAGGCTTTCACACTGCACCTTCAAAATCTTGTTAATGCACAAGAACCAACAAAGAGT
TTTGAGCCCGAATTTATTCATAATGTTACTTCAATGAGTCAAGAAGAGAATGGAGCAAAGATGGCACGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGAC
AAAAAAAGTGTGCAGATTCGTGAACAGGATCTAGGAGGGTCTATCGTAGATTCTAAGTCCGATCTAAGAGTGATTCAACTTCTAACCTTACTCTTGGTTGGAATC
ATTCGAGCATTGGTCGACATCCTTTGGCCGGTTCTAGAGGATGGAGTACCACAAGTACCGCAAGATCCTAACATGGTGATTCTTCAAGCAATTCAAGGAATGATG
GAAATGATGATGGAAGATAGACAAGAAAGGAGAGCGCAACAACAAAGAGAAGAACGAGCCTTACAAGAAGATGATGAAAATCCACCACCTTACTTGGAAGATATG
TATCACCATGCTATCAAAATTGAAGATCAATTGAGGAAAGAAGAGGAGCATTCTAAATGGAATGAATTCATGCAACCAAAAGGGAAGTTTGGTGCTGTCAAAAGA
GTGAAGGCCGAGAGCTCCAATGCCAAAAATAATGAAGTTCCAAAGGAGGTAAGGGAGAAGACTAATTCTCTTACATGTTGGAAGTGCAAAGGGTTTGGACACATG
AGCAAAGAATGTGTCAATAAAGAAGTCATGGTGATAAGAAATGGTGTTGTTGATTCAAATGATGCTTGTGAGAAATATGATGCAAAATTTAAGGAAGATTCTAAA
GCACATGTTGATGAATTTATTGAACAAGATCGCAAAGATTCTGATTTTGATAAAACATTGTTGCATAAGGACCCTTACTATCAAGCTCACATATTTCATCCTAGT
CTTTCTACTTTTCTAAGATTTTTGCAGGAAGTTCCAACTTTTCAATTCAAGCATGATCGAATACAAGAAACAAAGGAAGCTATAAAGGAGCCAAGAAGAGTTATC
CTATCATCTTCTCATGATCTTGAGATTGTCTTACAAGGTAACCATGGACATAAGAAACCTAAGGTGAAAGGCATTGTGGAAAACTACTTATCCAAGAATTTGTAT
AAAGAATTCCATGGTCGAGAAAGCAGAATGTTTGATGTTAAACCGATTCATTGGATTAGTCTAGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTATACCGAGTTGTTATTCAAATTATTTCAAGGTAATCTATTAGCTCCTGTACCCGTAGAGCCATTACAACCACCTTATCCAAAGTGGTACAACCAGCAT
GTTCATTGTGATTACCATGCAGGAGCTATAGGTCATTCAACTGAGAACTGTACTTCACTGAAGCATAAAATGCAAGTTATAATGAAGGCAGAATGGCTAAAGTTT
TCAAAGGAAGATGGAGCAATTATTACAAGAAAGGCAAGGAAGATTCAAGAGGCTTTCACACTGCACCTTCAAAATCTTGTTAATGCACAAGAACCAACAAAGAGT
TTTGAGCCCGAATTTATTCATAATGTTACTTCAATGAGTCAAGAAGAGAATGGAGCAAAGATGGCACGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGAC
AAAAAAAGTGTGCAGATTCGTGAACAGGATCTAGGAGGGTCTATCGTAGATTCTAAGTCCGATCTAAGAGTGATTCAACTTCTAACCTTACTCTTGGTTGGAATC
ATTCGAGCATTGGTCGACATCCTTTGGCCGGTTCTAGAGGATGGAGTACCACAAGTACCGCAAGATCCTAACATGGTGATTCTTCAAGCAATTCAAGGAATGATG
GAAATGATGATGGAAGATAGACAAGAAAGGAGAGCGCAACAACAAAGAGAAGAACGAGCCTTACAAGAAGATGATGAAAATCCACCACCTTACTTGGAAGATATG
TATCACCATGCTATCAAAATTGAAGATCAATTGAGGAAAGAAGAGGAGCATTCTAAATGGAATGAATTCATGCAACCAAAAGGGAAGTTTGGTGCTGTCAAAAGA
GTGAAGGCCGAGAGCTCCAATGCCAAAAATAATGAAGTTCCAAAGGAGGTAAGGGAGAAGACTAATTCTCTTACATGTTGGAAGTGCAAAGGGTTTGGACACATG
AGCAAAGAATGTGTCAATAAAGAAGTCATGGTGATAAGAAATGGTGTTGTTGATTCAAATGATGCTTGTGAGAAATATGATGCAAAATTTAAGGAAGATTCTAAA
GCACATGTTGATGAATTTATTGAACAAGATCGCAAAGATTCTGATTTTGATAAAACATTGTTGCATAAGGACCCTTACTATCAAGCTCACATATTTCATCCTAGT
CTTTCTACTTTTCTAAGATTTTTGCAGGAAGTTCCAACTTTTCAATTCAAGCATGATCGAATACAAGAAACAAAGGAAGCTATAAAGGAGCCAAGAAGAGTTATC
CTATCATCTTCTCATGATCTTGAGATTGTCTTACAAGGTAACCATGGACATAAGAAACCTAAGGTGAAAGGCATTGTGGAAAACTACTTATCCAAGAATTTGTAT
AAAGAATTCCATGGTCGAGAAAGCAGAATGTTTGATGTTAAACCGATTCATTGGATTAGTCTAGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAG
Protein sequenceShow/hide protein sequence
MSYTELLFKLFQGNLLAPVPVEPLQPPYPKWYNQHVHCDYHAGAIGHSTENCTSLKHKMQVIMKAEWLKFSKEDGAIITRKARKIQEAFTLHLQNLVNAQEPTKS
FEPEFIHNVTSMSQEENGAKMAREKLSILRDGTEDKKSVQIREQDLGGSIVDSKSDLRVIQLLTLLLVGIIRALVDILWPVLEDGVPQVPQDPNMVILQAIQGMM
EMMMEDRQERRAQQQREERALQEDDENPPPYLEDMYHHAIKIEDQLRKEEEHSKWNEFMQPKGKFGAVKRVKAESSNAKNNEVPKEVREKTNSLTCWKCKGFGHM
SKECVNKEVMVIRNGVVDSNDACEKYDAKFKEDSKAHVDEFIEQDRKDSDFDKTLLHKDPYYQAHIFHPSLSTFLRFLQEVPTFQFKHDRIQETKEAIKEPRRVI
LSSSHDLEIVLQGNHGHKKPKVKGIVENYLSKNLYKEFHGRESRMFDVKPIHWISLDQANSGVSRLRI