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Moc05g14540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g14540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionphotosynthetic NDH subunit of subcomplex B 2, chloroplastic
Genome locationchr5:10997558..11000159
RNA-Seq ExpressionMoc05g14540
SyntenyMoc05g14540
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005975 - carbohydrate metabolic process (biological process)
GO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0007095 - mitotic G2 DNA damage checkpoint (biological process)
GO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0097552 - mitochondrial double-strand break repair via homologous recombination (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
GO:0030870 - Mre11 complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0000014 - single-stranded DNA endodeoxyribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
GO:0047938 - glucose-6-phosphate 1-epimerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN59874.2 hypothetical protein Csa_001420 [Cucumis sativus]3.1e-1760.47Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  I     +   T+++ GRE+FFRVIRMGFEDIYVSS  S SNK+GKD+FICT PAS LVPVT+KPGE+ RGA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
XP_008465324.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucumis melo]6.8e-1759.3Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  I     +   T+++ GRE+FFRVIRMGFEDIYVSS  S SNK+GKD+FICT PAS LVPVT+KPGE+ +GA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
XP_011652321.1 photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucumis sativus]3.1e-1760.47Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  I     +   T+++ GRE+FFRVIRMGFEDIYVSS  S SNK+GKD+FICT PAS LVPVT+KPGE+ RGA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
XP_022155883.1 photosynthetic NDH subunit of subcomplex B 2, chloroplastic, partial [Momordica charantia]1.9e-1966.28Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  I     +   T+++ GRE+FFRVIRMGFEDIYVSS  SSSNKYGKDYFICT PAS LVPVTIKPGEE RGA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
XP_038905339.1 photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Benincasa hispida]3.1e-1758.14Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  +     +   T+++ GRE+FFRVIRMGFEDIY++S  S SNK+GKDYFICT PAS LVPVT+KPGE+ RGA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
TrEMBL top hitse value%identityAlignment
A0A0A0LCL5 Uncharacterized protein1.5e-1760.47Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  I     +   T+++ GRE+FFRVIRMGFEDIYVSS  S SNK+GKD+FICT PAS LVPVT+KPGE+ RGA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
A0A1S3CQ42 photosynthetic NDH subunit of subcomplex B 2, chloroplastic3.3e-1759.3Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  I     +   T+++ GRE+FFRVIRMGFEDIYVSS  S SNK+GKD+FICT PAS LVPVT+KPGE+ +GA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
A0A5A7U7W3 Photosynthetic NDH subunit of subcomplex B 23.3e-1759.3Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  I     +   T+++ GRE+FFRVIRMGFEDIYVSS  S SNK+GKD+FICT PAS LVPVT+KPGE+ +GA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
A0A6A5NK91 Putative galactose mutarotase-like domain-containing protein3.3e-1761.45Show/hide
Query:  VDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        V A+  KER         +   T+++ GRE+FFRVIRMGFEDIYVSS  S S KYGKDYFICT PAS LVPVT+ PGE+ RGA
Subjt:  VDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
A0A6J1DP41 photosynthetic NDH subunit of subcomplex B 2, chloroplastic9.3e-2066.28Show/hide
Query:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
        F  V A+   ER+  I     +   T+++ GRE+FFRVIRMGFEDIYVSS  SSSNKYGKDYFICT PAS LVPVTIKPGEE RGA
Subjt:  FIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLVPVTIKPGEEGRGA
SwissProt top hitse value%identityAlignment
Q94AQ8 Photosynthetic NDH subunit of subcomplex B 2, chloroplastic2.6e-1146.75Show/hide
Query:  ERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKD-YFICTSPASTLVPVTIKPGEEGRGA
        ER+  +     +   T+++ GR +FFR+IR+GFE++YV S  S  +KYGK  YF+CT P S LVPV +  GE  RGA
Subjt:  ERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKD-YFICTSPASTLVPVTIKPGEEGRGA
Arabidopsis top hitse value%identityAlignment
AT1G64770.1 NDH-dependent cyclic electron flow 11.8e-1246.75Show/hide
Query:  ERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKD-YFICTSPASTLVPVTIKPGEEGRGA
        ER+  +     +   T+++ GR +FFR+IR+GFE++YV S  S  +KYGK  YF+CT P S LVPV +  GE  RGA
Subjt:  ERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKD-YFICTSPASTLVPVTIKPGEEGRGA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAACCTGTTCAAGTTGGGATCGTTATGAAGGAGAACCTTTTATTCACAGAGTCCGCTCCTTCCTCTGTTCAATTGGAGAAAATTCTAGAAATCGATGTGATGTC
TTTTATAATGGTTGATGCAAGCAGCACGAAAGAAAGAATGGCTAAAATTGAAAGGAAACACGCTGCATTGATGACGACAGTTGAAGAAAGAGGGCGAGAGATGTTCTTCA
GGGTGATAAGGATGGGGTTCGAAGACATATACGTATCAAGTCGAAGTTCATCATCCAACAAGTATGGCAAAGACTACTTCATATGCACTAGCCCTGCTTCCACGTTGGTT
CCTGTGACTATAAAACCTGGTGAAGAGGGGAGGGGCGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAACCTGTTCAAGTTGGGATCGTTATGAAGGAGAACCTTTTATTCACAGAGTCCGCTCCTTCCTCTGTTCAATTGGAGAAAATTCTAGAAATCGATGTGATGTC
TTTTATAATGGTTGATGCAAGCAGCACGAAAGAAAGAATGGCTAAAATTGAAAGGAAACACGCTGCATTGATGACGACAGTTGAAGAAAGAGGGCGAGAGATGTTCTTCA
GGGTGATAAGGATGGGGTTCGAAGACATATACGTATCAAGTCGAAGTTCATCATCCAACAAGTATGGCAAAGACTACTTCATATGCACTAGCCCTGCTTCCACGTTGGTT
CCTGTGACTATAAAACCTGGTGAAGAGGGGAGGGGCGCCTAA
Protein sequenceShow/hide protein sequence
MKKPVQVGIVMKENLLFTESAPSSVQLEKILEIDVMSFIMVDASSTKERMAKIERKHAALMTTVEERGREMFFRVIRMGFEDIYVSSRSSSSNKYGKDYFICTSPASTLV
PVTIKPGEEGRGA