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Moc05g15330 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g15330
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:11622460..11623836
RNA-Seq ExpressionMoc05g15330
SyntenyMoc05g15330
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143565.1 uncharacterized protein LOC111013434 [Momordica charantia]6.6e-3042.92Show/hide
Query:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLAD-------------SKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQL--
        +YVDGSSNE+  G GVL      ++  +        S + ++++ LL                 S+ + I N+   D +   K   + + L  +++ L  
Subjt:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLAD-------------SKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQL--

Query:  --DFEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG
           +E+ ++          LAKLASAYETDL RSV VEIL N SILEPDMMEIDS PPS ++ I+D L G +PA+P+E  KMT  AARYLLRDG +Y RG
Subjt:  --DFEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG

Query:  FCLPILKCISRE
        FCLP+LKCIS+E
Subjt:  FCLPILKCISRE

XP_022149417.1 protein NYNRIN-like [Momordica charantia]4.4e-2641.8Show/hide
Query:  MYVDGSSNERGRGVGVLSSLQ----MTWAAHGKGTWSQSSSDFQRLLADSKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQLDFEVRELQCRCLAKL
        +YVDGSSNERG G G+L   Q      +A       S + ++++ LLA  +  +R  +N      +V    Q++   +       D  +     + L KL
Subjt:  MYVDGSSNERGRGVGVLSSLQ----MTWAAHGKGTWSQSSSDFQRLLADSKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQLDFEVRELQCRCLAKL

Query:  ASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRGFCLPILKCISRE
        ASAYETDL RSV VEIL + SILEPD+ME+D+  PS VD I + ++G+ P +PKE  KM   AAR+ LR+G +Y RGF LP+LKC++ E
Subjt:  ASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRGFCLPILKCISRE

XP_022151715.1 uncharacterized protein LOC111019628 [Momordica charantia]3.7e-2538.46Show/hide
Query:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQL-D
        +YVDGSSNERG G G+L       +  +A       S + ++++ LLA  +             S+ + + N+  +  E   K   + + LS +++ L  
Subjt:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQL-D

Query:  FEVREL---------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG
        FE  E+             LAKLASAYETDL RSV VEIL N SIL+PD+MEID   PS +D I + ++G+ P   KE  KM   AAR++LRDG +Y RG
Subjt:  FEVREL---------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG

Query:  FCLPILKCISRETRIIARRNW
        F LP+LKC++ E  +   R +
Subjt:  FCLPILKCISRETRIIARRNW

XP_022156791.1 uncharacterized protein LOC111023625 [Momordica charantia]4.4e-2641.04Show/hide
Query:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQL--
        +YVDGSSNE+G G GVL      ++  +A       S + + ++ L    +             S+ + I N+   D +   K   + + L  +++ L  
Subjt:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQL--

Query:  --DFEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG
           +E+R++          LAKLAS YETDL RSV VEIL N SILE DMMEIDS P S ++ I+D L G +PA+P+E  KMT  AARYLLRDG +Y RG
Subjt:  --DFEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG

Query:  FCLPILKCISRE
        F LP+LK I  E
Subjt:  FCLPILKCISRE

XP_022157626.1 uncharacterized protein LOC111024288 [Momordica charantia]9.8e-2641.51Show/hide
Query:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQLD-
        MYV  SSNE+G G GVL      ++  +A       S + ++++ LLA  +             S+ + I N+  +  E   K   + + L  +++ L  
Subjt:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQLD-

Query:  ---FEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG
           +E+ ++          LAKLASAY+T+L RSV V+IL N SILE DMME+DS+P S +D IR+ LEG+IP NPKEA KM    ARYLLRD  +Y RG
Subjt:  ---FEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG

Query:  FCLPILKCISRE
        F LP+LKCIS+E
Subjt:  FCLPILKCISRE

TrEMBL top hitse value%identityAlignment
A0A6J1CP53 Ribonuclease H3.2e-3042.92Show/hide
Query:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLAD-------------SKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQL--
        +YVDGSSNE+  G GVL      ++  +        S + ++++ LL                 S+ + I N+   D +   K   + + L  +++ L  
Subjt:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLAD-------------SKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQL--

Query:  --DFEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG
           +E+ ++          LAKLASAYETDL RSV VEIL N SILEPDMMEIDS PPS ++ I+D L G +PA+P+E  KMT  AARYLLRDG +Y RG
Subjt:  --DFEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG

Query:  FCLPILKCISRE
        FCLP+LKCIS+E
Subjt:  FCLPILKCISRE

A0A6J1D7W6 Ribonuclease H2.1e-2641.8Show/hide
Query:  MYVDGSSNERGRGVGVLSSLQ----MTWAAHGKGTWSQSSSDFQRLLADSKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQLDFEVRELQCRCLAKL
        +YVDGSSNERG G G+L   Q      +A       S + ++++ LLA  +  +R  +N      +V    Q++   +       D  +     + L KL
Subjt:  MYVDGSSNERGRGVGVLSSLQ----MTWAAHGKGTWSQSSSDFQRLLADSKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQLDFEVRELQCRCLAKL

Query:  ASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRGFCLPILKCISRE
        ASAYETDL RSV VEIL + SILEPD+ME+D+  PS VD I + ++G+ P +PKE  KM   AAR+ LR+G +Y RGF LP+LKC++ E
Subjt:  ASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRGFCLPILKCISRE

A0A6J1DBZ0 uncharacterized protein LOC1110196281.8e-2538.46Show/hide
Query:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQL-D
        +YVDGSSNERG G G+L       +  +A       S + ++++ LLA  +             S+ + + N+  +  E   K   + + LS +++ L  
Subjt:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQL-D

Query:  FEVREL---------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG
        FE  E+             LAKLASAYETDL RSV VEIL N SIL+PD+MEID   PS +D I + ++G+ P   KE  KM   AAR++LRDG +Y RG
Subjt:  FEVREL---------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG

Query:  FCLPILKCISRETRIIARRNW
        F LP+LKC++ E  +   R +
Subjt:  FCLPILKCISRETRIIARRNW

A0A6J1DW17 Ribonuclease H2.1e-2641.04Show/hide
Query:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQL--
        +YVDGSSNE+G G GVL      ++  +A       S + + ++ L    +             S+ + I N+   D +   K   + + L  +++ L  
Subjt:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQL--

Query:  --DFEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG
           +E+R++          LAKLAS YETDL RSV VEIL N SILE DMMEIDS P S ++ I+D L G +PA+P+E  KMT  AARYLLRDG +Y RG
Subjt:  --DFEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG

Query:  FCLPILKCISRE
        F LP+LK I  E
Subjt:  FCLPILKCISRE

A0A6J1DYR5 uncharacterized protein LOC1110242884.8e-2641.51Show/hide
Query:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQLD-
        MYV  SSNE+G G GVL      ++  +A       S + ++++ LLA  +             S+ + I N+  +  E   K   + + L  +++ L  
Subjt:  MYVDGSSNERGRGVGVL----SSLQMTWAAHGKGTWSQSSSDFQRLLADSK-------------SNQREISNERALDGEVLGKGQIVPRSLSGLQNQLD-

Query:  ---FEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG
           +E+ ++          LAKLASAY+T+L RSV V+IL N SILE DMME+DS+P S +D IR+ LEG+IP NPKEA KM    ARYLLRD  +Y RG
Subjt:  ---FEVREL------QCRCLAKLASAYETDLVRSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRG

Query:  FCLPILKCISRE
        F LP+LKCIS+E
Subjt:  FCLPILKCISRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGTGGATGGATCTTCAAATGAAAGGGGTCGCGGTGTGGGTGTGCTCTCCTCGCTCCAGATGACATGGGCTGCACATGGCAAGGGGACTTGGAGTCAGTCA
TCTTCAGATTTTCAGCGACTCCTAGCTGATAGTAAATCAAATCAAAGAGAAATATCAAACGAAAGAGCCTTGGATGGAGAAGTACTTGGGAAAGGTCAGATCGTA
CCTCGCTCACTTTCAGGCTTACAAAATCAGCTAGATTTCGAGGTCAGAGAACTCCAATGCCGATGCTTAGCCAAGCTGGCATCCGCCTACGAGACCGACCTGGTG
AGGTCGGTCCAAGTGGAGATCCTTGGTAATTCTTCTATCTTAGAGCCAGATATGATGGAAATCGATTCCCAGCCTCCGTCATTGGTGGACATGATCAGGGACATC
CTGGAAGGCAGCATTCCAGCAAATCCCAAAGAAGCAAATAAAATGACACATACAGCAGCTCGGTACCTGCTCCGAGATGGAAGAGTGTACTGGCGTGGGTTCTGC
TTACCAATCCTTAAGTGCATCTCCAGAGAAACGAGAATTATTGCCCGTAGAAATTGGGATGCCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACGTGGATGGATCTTCAAATGAAAGGGGTCGCGGTGTGGGTGTGCTCTCCTCGCTCCAGATGACATGGGCTGCACATGGCAAGGGGACTTGGAGTCAGTCA
TCTTCAGATTTTCAGCGACTCCTAGCTGATAGTAAATCAAATCAAAGAGAAATATCAAACGAAAGAGCCTTGGATGGAGAAGTACTTGGGAAAGGTCAGATCGTA
CCTCGCTCACTTTCAGGCTTACAAAATCAGCTAGATTTCGAGGTCAGAGAACTCCAATGCCGATGCTTAGCCAAGCTGGCATCCGCCTACGAGACCGACCTGGTG
AGGTCGGTCCAAGTGGAGATCCTTGGTAATTCTTCTATCTTAGAGCCAGATATGATGGAAATCGATTCCCAGCCTCCGTCATTGGTGGACATGATCAGGGACATC
CTGGAAGGCAGCATTCCAGCAAATCCCAAAGAAGCAAATAAAATGACACATACAGCAGCTCGGTACCTGCTCCGAGATGGAAGAGTGTACTGGCGTGGGTTCTGC
TTACCAATCCTTAAGTGCATCTCCAGAGAAACGAGAATTATTGCCCGTAGAAATTGGGATGCCAACTGA
Protein sequenceShow/hide protein sequence
MYVDGSSNERGRGVGVLSSLQMTWAAHGKGTWSQSSSDFQRLLADSKSNQREISNERALDGEVLGKGQIVPRSLSGLQNQLDFEVRELQCRCLAKLASAYETDLV
RSVQVEILGNSSILEPDMMEIDSQPPSLVDMIRDILEGSIPANPKEANKMTHTAARYLLRDGRVYWRGFCLPILKCISRETRIIARRNWDAN