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Moc05g16730 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g16730
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr5:12548726..12549181
RNA-Seq ExpressionMoc05g16730
SyntenyMoc05g16730
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]5.7e-4061.59Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER RK  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-3960.93Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER R+  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-3960.93Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER R+  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-3960.93Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER R+  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-3960.93Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER R+  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

TrEMBL top hitse value%identityAlignment
A0A5A7SUK4 Reverse transcriptase2.8e-4061.59Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER RK  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

A0A5A7T0E2 Reverse transcriptase6.2e-4060.93Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER R+  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

A0A5A7UXR6 Reverse transcriptase6.2e-4060.93Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER R+  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

A0A5D3C4R1 Reverse transcriptase6.2e-4060.93Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER R+  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

A0A5D3DBE0 Reverse transcriptase6.2e-4060.93Show/hide
Query:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK
        MKKWAD+KRR LEFR GD+VLIKLRPEQ+RFRGRKDQRL                            I+PVIHVSNLKPYH D ED +RN   RP ID  
Subjt:  MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRL----------------------------IHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFK

Query:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW
        QKEDK  EEILAER R+  RP R++ E+LVKWK+LP  ETSWER EDLEAW
Subjt:  QKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDVETSWEREEDLEAW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATGGGCCGACCGCAAGAGACGCCTTCTCGAATTTCGAGTAGGCGACAAAGTTCTTATCAAGTTGAGGCCAGAACAGATTCGTTTCCGAGGACGCAAAGACCA
GAGACTCATTCACCCGGTGATCCACGTGAGCAATTTAAAACCTTACCACCCCGACCTTGAGGATGACGAACGCAATGCTGCTGTGCGGCCCGCCATCGACTTCAAACAGA
AGGAAGACAAAAAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGACCCGTTCGAAAAGTTCGAGAATTCCTCGTCAAATGGAAGGACCTACCTGATGTA
GAGACCAGCTGGGAACGAGAAGAAGACCTTGAAGCCTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATGGGCCGACCGCAAGAGACGCCTTCTCGAATTTCGAGTAGGCGACAAAGTTCTTATCAAGTTGAGGCCAGAACAGATTCGTTTCCGAGGACGCAAAGACCA
GAGACTCATTCACCCGGTGATCCACGTGAGCAATTTAAAACCTTACCACCCCGACCTTGAGGATGACGAACGCAATGCTGCTGTGCGGCCCGCCATCGACTTCAAACAGA
AGGAAGACAAAAAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGACCCGTTCGAAAAGTTCGAGAATTCCTCGTCAAATGGAAGGACCTACCTGATGTA
GAGACCAGCTGGGAACGAGAAGAAGACCTTGAAGCCTGGTAG
Protein sequenceShow/hide protein sequence
MKKWADRKRRLLEFRVGDKVLIKLRPEQIRFRGRKDQRLIHPVIHVSNLKPYHPDLEDDERNAAVRPAIDFKQKEDKKAEEILAERTRKVGRPVRKVREFLVKWKDLPDV
ETSWEREEDLEAW