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Moc05g17210 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g17210
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:12825415..12826186
RNA-Seq ExpressionMoc05g17210
SyntenyMoc05g17210
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8709065.1 hypothetical protein F3Y22_tig00110332pilonHSYRG00834 [Hibiscus syriacus]1.0e-2539.22Show/hide
Query:  INFDLWQVQVKDVLIQSGLHKALKGRP---SEG-ACEKLSDDGGSMESTVGS----------------------------------NRGMKISDHLSNLN
        INF LWQVQVKD+LIQSGL+KALKG+P   SEG   +K SD  G    +  S                                    G KISDHLS LN
Subjt:  INFDLWQVQVKDVLIQSGLHKALKGRP---SEG-ACEKLSDDGGSMESTVGS----------------------------------NRGMKISDHLSNLN

Query:  SIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-------------------------------------SGHM
         I+ ELE+I VKIDDE KALRLI SL  S+EHM+ +LMYEK+ +NF+E  SKL+SE+++                                      GH+
Subjt:  SIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-------------------------------------SGHM

Query:  KKDCPN-RTGSSKGSRPDADNVSLIKGDDDQF
        K DC N    S+  S+ D  NV + + +DD+F
Subjt:  KKDCPN-RTGSSKGSRPDADNVSLIKGDDDQF

KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]8.7e-2536.99Show/hide
Query:  INFDLWQVQVKDVLIQSGLHKALKGRP----SEGACEKLSDDGGSMES----------------------------------------------------
        INF LWQVQVKDVLIQSGLHKAL+G+P    S+ +     DD    E                                                     
Subjt:  INFDLWQVQVKDVLIQSGLHKALKGRP----SEGACEKLSDDGGSMES----------------------------------------------------

Query:  --TVGSNRGMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK---------------------
          T+  +   KISDHLS LN+I+ ELEAI VK++DE KALRLILSL  S+EHMKPILMY K+TL +A+   KLLSE+K+                     
Subjt:  --TVGSNRGMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK---------------------

Query:  --------------SGHMKKDCPNRTGSSKGSRPDADNVSLIKGDD
                      SGH+K++CP    S+  S+  A+NV+++ GDD
Subjt:  --------------SGHMKKDCPNRTGSSKGSRPDADNVSLIKGDD

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]8.7e-2536.99Show/hide
Query:  INFDLWQVQVKDVLIQSGLHKALKGRP----SEGACEKLSDDGGSMES----------------------------------------------------
        INF LWQVQVKDVLIQSGLHKAL+G+P    S+ +     DD    E                                                     
Subjt:  INFDLWQVQVKDVLIQSGLHKALKGRP----SEGACEKLSDDGGSMES----------------------------------------------------

Query:  --TVGSNRGMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK---------------------
          T+  +   KISDHLS LN+I+ ELEAI VK++DE KALRLILSL  S+EHMKPILMY K+TL +A+   KLLSE+K+                     
Subjt:  --TVGSNRGMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK---------------------

Query:  --------------SGHMKKDCPNRTGSSKGSRPDADNVSLIKGDD
                      SGH+K++CP    S+  S+  A+NV+++ GDD
Subjt:  --------------SGHMKKDCPNRTGSSKGSRPDADNVSLIKGDD

QHN81458.1 Retrovirus-related Pol polyprotein [Arachis hypogaea]5.1e-2539.24Show/hide
Query:  INFDLWQVQVKDVLIQSGLHKALKGRPS---------------------------------EGACEKLSDDGGSMESTVGSNR--------------GMK
        INF LWQ+QVKDVLIQSGLHKALK R S                                 + A E      G  +S   SNR               +K
Subjt:  INFDLWQVQVKDVLIQSGLHKALKGRPS---------------------------------EGACEKLSDDGGSMESTVGSNR--------------GMK

Query:  ISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKK---------------------------------
        ISDHLS +N I+ ELEAI VKIDDE KALRLILSL  S+E++KP+LMY K+TLNF E ASKL++E++                                 
Subjt:  ISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKK---------------------------------

Query:  ---KSGHMKKDCPNRTGSSKGSRPDADNVSLIKGDDD
           KSGH+K++CP    S K S+ D  N++L   +DD
Subjt:  ---KSGHMKKDCPNRTGSSKGSRPDADNVSLIKGDDD

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]2.8e-3947.54Show/hide
Query:  MINFDLWQVQVKDVLIQSGLHKALKGRPSEGACEKLSDDGGSMESTVGSNR-------------------------------------------------
        MINF LWQVQVKDVLIQS LHKALKGRPSEGA EKLSDDGG MES+ GS+R                                                 
Subjt:  MINFDLWQVQVKDVLIQSGLHKALKGRPSEGACEKLSDDGGSMESTVGSNR-------------------------------------------------

Query:  -------------------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK----
                                 GMKISDHLSNLNSIIFELEAIEVKIDDE KALRLILSL  S+EHMKPILMY KDTLNFAE  SKLLSE+++    
Subjt:  -------------------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK----

Query:  ---------------------------------SGHMKKDCPNR
                                         SGHMKKDCPNR
Subjt:  ---------------------------------SGHMKKDCPNR

TrEMBL top hitse value%identityAlignment
A0A6A2YS90 Transcription initiation factor IIA subunit 21.0e-2335.74Show/hide
Query:  INFDLWQVQVKDVLIQSGLHKALKGRP---SEG-ACEKLSDDGGS--------------------------------------------------MESTV
        INF LWQVQVKD+LIQSGL+KALKG+P   SEG   +K SD  G                                                    ++  
Subjt:  INFDLWQVQVKDVLIQSGLHKALKGRP---SEG-ACEKLSDDGGS--------------------------------------------------MESTV

Query:  GSNR--------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-----------
         SNR              G KISDHLS LN I+ ELE+I V+IDDE KALRLI SL  S+EHM+ +LMY K+ +NF+E  SKL+SE+++           
Subjt:  GSNR--------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-----------

Query:  --------------------------SGHMKKDCPN-RTGSSKGSRPDADNVSLIKGDDDQFL
                                   GH+KKDC N    S+ GS+ DA NV + + +DD+F+
Subjt:  --------------------------SGHMKKDCPN-RTGSSKGSRPDADNVSLIKGDDDQFL

A0A6A3B141 CCHC-type domain-containing protein5.0e-2639.22Show/hide
Query:  INFDLWQVQVKDVLIQSGLHKALKGRP---SEG-ACEKLSDDGGSMESTVGS----------------------------------NRGMKISDHLSNLN
        INF LWQVQVKD+LIQSGL+KALKG+P   SEG   +K SD  G    +  S                                    G KISDHLS LN
Subjt:  INFDLWQVQVKDVLIQSGLHKALKGRP---SEG-ACEKLSDDGGSMESTVGS----------------------------------NRGMKISDHLSNLN

Query:  SIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-------------------------------------SGHM
         I+ ELE+I VKIDDE KALRLI SL  S+EHM+ +LMYEK+ +NF+E  SKL+SE+++                                      GH+
Subjt:  SIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-------------------------------------SGHM

Query:  KKDCPN-RTGSSKGSRPDADNVSLIKGDDDQF
        K DC N    S+  S+ D  NV + + +DD+F
Subjt:  KKDCPN-RTGSSKGSRPDADNVSLIKGDDDQF

A0A6A3BK59 CCHC-type domain-containing protein1.4e-2335.74Show/hide
Query:  INFDLWQVQVKDVLIQSGLHKALKGRP---SEG-ACEKLSDDGGS--------------------------------------------------MESTV
        INF LWQVQVKD+LIQSGL+KALKG+P   SEG   +K SD  G                                                    ++  
Subjt:  INFDLWQVQVKDVLIQSGLHKALKGRP---SEG-ACEKLSDDGGS--------------------------------------------------MESTV

Query:  GSNR--------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-----------
         SNR              G KISDHLS LN I+ ELE+I V+IDDE KALRLI SL  S+EHM+ +LMY K+ +NF+E  SKL+SE+++           
Subjt:  GSNR--------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-----------

Query:  --------------------------SGHMKKDCPN-RTGSSKGSRPDADNVSLIKGDDDQFL
                                   GH+KKDC N    S+ GS+ DA NV + + +DD+F+
Subjt:  --------------------------SGHMKKDCPN-RTGSSKGSRPDADNVSLIKGDDDQFL

A0A6A3DA47 CCHC-type domain-containing protein5.2e-2335.5Show/hide
Query:  INFDLWQVQVKDVLIQSGLHKALKGRPS---EG-ACEKLSDDGGS--------------------------------------------------MESTV
        INF LWQVQVKD+LIQSGL+KALKG+P+   EG   +K SD  G                                                    ++  
Subjt:  INFDLWQVQVKDVLIQSGLHKALKGRPS---EG-ACEKLSDDGGS--------------------------------------------------MESTV

Query:  GSNR--------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-----------
         SNR              G KISDHLS LN I+ ELE+I V+IDDE KALRLI SL  S+EHM+ +LMY K+ +NF+E  SKL+SE+++           
Subjt:  GSNR--------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK-----------

Query:  --------------------------SGHMKKDCPN-RTGSSKGSRPDADNVSLIKGDDDQF
                                   GH+KKDC N    S+ GS+ DA NV + + +DD+F
Subjt:  --------------------------SGHMKKDCPN-RTGSSKGSRPDADNVSLIKGDDDQF

A0A6J1CG82 uncharacterized protein LOC1110105211.4e-3947.54Show/hide
Query:  MINFDLWQVQVKDVLIQSGLHKALKGRPSEGACEKLSDDGGSMESTVGSNR-------------------------------------------------
        MINF LWQVQVKDVLIQS LHKALKGRPSEGA EKLSDDGG MES+ GS+R                                                 
Subjt:  MINFDLWQVQVKDVLIQSGLHKALKGRPSEGACEKLSDDGGSMESTVGSNR-------------------------------------------------

Query:  -------------------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK----
                                 GMKISDHLSNLNSIIFELEAIEVKIDDE KALRLILSL  S+EHMKPILMY KDTLNFAE  SKLLSE+++    
Subjt:  -------------------------GMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKDTLNFAETASKLLSEKKK----

Query:  ---------------------------------SGHMKKDCPNR
                                         SGHMKKDCPNR
Subjt:  ---------------------------------SGHMKKDCPNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAACTTCGACTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGATTACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTGTGAAAAG
TTAAGCGATGATGGTGGTTCAATGGAGTCCACCGTTGGTTCTAATAGAGGTATGAAAATTTCGGATCATCTGAGTAATCTTAATAGCATCATCTTTGAACTGGAG
GCGATCGAAGTAAAGATAGATGACGAACATAAGGCACTAAGACTCATCTTATCACTTCTACCTTCTTTTGAACACATGAAGCCGATCTTGATGTATGAGAAGGAT
ACTTTGAATTTTGCCGAGACTGCTAGTAAACTGTTGTCAGAAAAAAAGAAGTCTGGGCACATGAAGAAGGATTGTCCCAACAGAACTGGTTCGTCAAAGGGCTCT
AGGCCGGATGCTGACAATGTTTCTCTCATCAAGGGAGACGATGATCAGTTCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCAACTTCGACTTGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGATTACACAAGGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTGTGAAAAG
TTAAGCGATGATGGTGGTTCAATGGAGTCCACCGTTGGTTCTAATAGAGGTATGAAAATTTCGGATCATCTGAGTAATCTTAATAGCATCATCTTTGAACTGGAG
GCGATCGAAGTAAAGATAGATGACGAACATAAGGCACTAAGACTCATCTTATCACTTCTACCTTCTTTTGAACACATGAAGCCGATCTTGATGTATGAGAAGGAT
ACTTTGAATTTTGCCGAGACTGCTAGTAAACTGTTGTCAGAAAAAAAGAAGTCTGGGCACATGAAGAAGGATTGTCCCAACAGAACTGGTTCGTCAAAGGGCTCT
AGGCCGGATGCTGACAATGTTTCTCTCATCAAGGGAGACGATGATCAGTTCCTTTAA
Protein sequenceShow/hide protein sequence
MINFDLWQVQVKDVLIQSGLHKALKGRPSEGACEKLSDDGGSMESTVGSNRGMKISDHLSNLNSIIFELEAIEVKIDDEHKALRLILSLLPSFEHMKPILMYEKD
TLNFAETASKLLSEKKKSGHMKKDCPNRTGSSKGSRPDADNVSLIKGDDDQFL