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Moc05g21680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g21680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description40S ribosomal protein SA
Genome locationchr5:15505162..15505594
RNA-Seq ExpressionMoc05g21680
SyntenyMoc05g21680
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0002181 - cytoplasmic translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144441.1 40S ribosomal protein SA isoform X1 [Cucumis sativus]8.1e-2483.33Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPI
        +VDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+ DAQWGAPD++PAP A P+
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPI

XP_008460336.2 PREDICTED: 40S ribosomal protein SA-like [Cucumis melo]1.4e-2373.08Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAP----VAPP---IQWFEQ
        +VDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+ DAQWGAPD++PAP    V PP   ++W ++
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAP----VAPP---IQWFEQ

XP_022152685.1 40S ribosomal protein SA-like [Momordica charantia]6.2e-2481.08Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPP---IQWFEQ
        +VDLFFYREPEEAKEQEEEEAVA PDYGIADFGAAPLVASDQWAGQ+ DAQWGAPDVVPA  APP   ++W ++
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPP---IQWFEQ

XP_022155491.1 40S ribosomal protein SA-like [Momordica charantia]2.1e-2481.08Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPD-VVPAPVAP--PIQWFEQ
        +VDLFFYREPEEAKEQEEEEA APPDYGIADFGAAPLVASDQWAGQ+PDAQWGAPD VVPA  AP   ++W ++
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPD-VVPAPVAP--PIQWFEQ

XP_031738662.1 40S ribosomal protein SA isoform X2 [Cucumis sativus]8.1e-2483.33Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPI
        +VDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+ DAQWGAPD++PAP A P+
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPI

TrEMBL top hitse value%identityAlignment
A0A0A0L946 40S ribosomal protein SA3.9e-2483.33Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPI
        +VDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+ DAQWGAPD++PAP A P+
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPI

A0A5A7UIM9 40S ribosomal protein SA6.7e-2473.08Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAP----VAPP---IQWFEQ
        +VDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+ DAQWGAPD++PAP    V PP   ++W ++
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAP----VAPP---IQWFEQ

A0A5D3D6J7 40S ribosomal protein SA6.7e-2473.08Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAP----VAPP---IQWFEQ
        +VDLFFYREPEEAKE+EEEEAVAPPDYGIAD+G APLVASDQWAGQ+ DAQWGAPD++PAP    V PP   ++W ++
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAP----VAPP---IQWFEQ

A0A6J1DEM6 40S ribosomal protein SA3.0e-2481.08Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPP---IQWFEQ
        +VDLFFYREPEEAKEQEEEEAVA PDYGIADFGAAPLVASDQWAGQ+ DAQWGAPDVVPA  APP   ++W ++
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPP---IQWFEQ

A0A6J1DWT5 40S ribosomal protein SA1.0e-2481.08Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPD-VVPAPVAP--PIQWFEQ
        +VDLFFYREPEEAKEQEEEEA APPDYGIADFGAAPLVASDQWAGQ+PDAQWGAPD VVPA  AP   ++W ++
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPD-VVPAPVAP--PIQWFEQ

SwissProt top hitse value%identityAlignment
A5BUU4 40S ribosomal protein SA9.7e-1253.42Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPL--VASDQWAGQVPDA-QWGA--PDVVPAPVAPPIQW
        +VDLFFYREPEE KEQE +E VA PDYGI D+ A  L  +    W   + DA QWGA  P V P P  P   W
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPL--VASDQWAGQVPDA-QWGA--PDVVPAPVAPPIQW

O22518 40S ribosomal protein SA4.8e-1152.94Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPIQW
        +VDLFFYREPEEAK+QEEEEA A  DY I DF A  + A  QW G + D  W      P P  P + W
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPIQW

O65751 40S ribosomal protein SA5.3e-1048.53Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPIQW
        +VDLFFYREPEEAK+ EE+E VA PDY IADF  + + +  QW   + D  W      P P  P + W
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPIQW

O80377 40S ribosomal protein SA6.3e-1153.42Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPI-QWFEQG
        +VDLFFYREPEE K+QEEE+ +   DY +AD+ AAP+  +DQW   +PDAQWG   V PA  A P   W + G
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPI-QWFEQG

Q08682 40S ribosomal protein Sa-13.2e-0744.62Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQVPDAQWGAPDVVPAPVAP
        +VDLFFYREPEE K ++E+EA    +YG        +V  DQW   Q+PDA W      P   AP
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQVPDAQWGAPDVVPAPVAP

Arabidopsis top hitse value%identityAlignment
AT1G72370.1 40s ribosomal protein SA2.3e-0844.62Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQVPDAQWGAPDVVPAPVAP
        +VDLFFYREPEE K ++E+EA    +YG        +V  DQW   Q+PDA W      P   AP
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQVPDAQWGAPDVVPAPVAP

AT1G72370.2 40s ribosomal protein SA2.3e-0844.62Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQVPDAQWGAPDVVPAPVAP
        +VDLFFYREPEE K ++E+EA    +YG        +V  DQW   Q+PDA W      P   AP
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQVPDAQWGAPDVVPAPVAP

AT3G04770.2 40s ribosomal protein SA B8.7e-0844.78Show/hide
Query:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQVPDAQWGAPDVVPAPVAPPI
        +VDLFFYREPEEAK++ +EEA    DYG        +V  DQW   Q+ DA W      P   AP +
Subjt:  IVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQW-AGQVPDAQWGAPDVVPAPVAPPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTTTGGCTTCTGGTGAGGATGGTTCTGCAGATGCGTGGAACAATTCATGCTGGGCACAAGTGGGACGTGATGGTAAATTCAGAATTGTGGATTTATTT
TTCTATCGGGAGCCTGAGGAAGCTAAGGAGCAAGAAGAAGAAGAGGCTGTTGCGCCTCCAGATTATGGCATTGCAGATTTCGGAGCTGCTCCGCTTGTTGCTTCA
GATCAATGGGCTGGACAGGTTCCTGATGCTCAGTGGGGTGCTCCTGATGTGGTTCCAGCTCCTGTTGCTCCACCCATCCAGTGGTTCGAGCAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTTTGGCTTCTGGTGAGGATGGTTCTGCAGATGCGTGGAACAATTCATGCTGGGCACAAGTGGGACGTGATGGTAAATTCAGAATTGTGGATTTATTT
TTCTATCGGGAGCCTGAGGAAGCTAAGGAGCAAGAAGAAGAAGAGGCTGTTGCGCCTCCAGATTATGGCATTGCAGATTTCGGAGCTGCTCCGCTTGTTGCTTCA
GATCAATGGGCTGGACAGGTTCCTGATGCTCAGTGGGGTGCTCCTGATGTGGTTCCAGCTCCTGTTGCTCCACCCATCCAGTGGTTCGAGCAAGGTTGA
Protein sequenceShow/hide protein sequence
MSVLASGEDGSADAWNNSCWAQVGRDGKFRIVDLFFYREPEEAKEQEEEEAVAPPDYGIADFGAAPLVASDQWAGQVPDAQWGAPDVVPAPVAPPIQWFEQG