; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc05g22860 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g22860
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr5:16342173..16343064
RNA-Seq ExpressionMoc05g22860
SyntenyMoc05g22860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040926.1 uncharacterized protein E6C27_scaffold125G00500 [Cucumis melo var. makuwa]3.2e-0736.18Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWS-KSCNTKKNEDPVESND-------VCEKHDTQLEEESRAH-DGEFI
        EIAH+VD NPP  +EDMYHYAIKIE QL+++    KR      +G  V   +   +S NTKK E   E ++        CE++D QLEEE     D E+I
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWS-KSCNTKKNEDPVESND-------VCEKHDTQLEEESRAH-DGEFI

Query:  EKNNKDSDVDESNHVQVKPKTKGI--------VENYLYKKSSNNVIVENTQC
        E+ N  S +     + VK K + I        +   L + S  +++++N  C
Subjt:  EKNNKDSDVDESNHVQVKPKTKGI--------VENYLYKKSSNNVIVENTQC

XP_022153198.1 uncharacterized protein LOC111020753 [Momordica charantia]4.7e-0631.85Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSK-------------------------SCNTKKNEDP----------
        EIAH VD NPPPYLEDMYHY +KIEDQL+++    KR    ++  +    N W+K                         S NTK+NE P          
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSK-------------------------SCNTKKNEDP----------

Query:  ---------------------------VESNDVCEKHDTQLEEESRAHDGEFIEKNN
                                   V+S+D CE+HD + EE     D E+IE+ N
Subjt:  ---------------------------VESNDVCEKHDTQLEEESRAHDGEFIEKNN

XP_022932136.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita moschata]4.0e-0547.62Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSKSCNTKKNE
        EIAH+VD NPPPYLEDM HYA+KIEDQL+++    KR    ++  +      W+K     +NE
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSKSCNTKKNE

XP_023520950.1 uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo]9.4e-0733.73Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCN---------QKGSLVLPNE---------------------------------------
        EIAH+VD NPPPYLEDMYHYA+KIEDQL+++    KR               K S V  NE                                       
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCN---------QKGSLVLPNE---------------------------------------

Query:  W--------SKSCNTKK----NEDPVESNDVCEKHDTQLEEESRAHDGEFIE----KNNKDSDVDE
        W        SK C  KK        ++S+D CE HD+QL EE  A+D E++E    K  K +D +E
Subjt:  W--------SKSCNTKK----NEDPVESNDVCEKHDTQLEEESRAHDGEFIE----KNNKDSDVDE

XP_023544048.1 uncharacterized protein LOC111803745 [Cucurbita pepo subsp. pepo]6.1e-0632.9Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRL---------NQCNQKGSLVLPNE---------------------------------------
        EIAH+VD NPPPYLEDMYHYA+KIEDQL+++    KR          ++   K S V  NE                                       
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRL---------NQCNQKGSLVLPNE---------------------------------------

Query:  WS--------KSCNTKK----NEDPVESNDVCEKHDTQLEEESRAHDGEFIEKNN
        W         K C  KK        ++ ND CE HD+ L EE  A+D E++E+ N
Subjt:  WS--------KSCNTKK----NEDPVESNDVCEKHDTQLEEESRAHDGEFIEKNN

TrEMBL top hitse value%identityAlignment
A0A5A7TFV5 Retrotrans_gag domain-containing protein1.6e-0736.18Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWS-KSCNTKKNEDPVESND-------VCEKHDTQLEEESRAH-DGEFI
        EIAH+VD NPP  +EDMYHYAIKIE QL+++    KR      +G  V   +   +S NTKK E   E ++        CE++D QLEEE     D E+I
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWS-KSCNTKKNEDPVESND-------VCEKHDTQLEEESRAH-DGEFI

Query:  EKNNKDSDVDESNHVQVKPKTKGI--------VENYLYKKSSNNVIVENTQC
        E+ N  S +     + VK K + I        +   L + S  +++++N  C
Subjt:  EKNNKDSDVDESNHVQVKPKTKGI--------VENYLYKKSSNNVIVENTQC

A0A5A7UR86 Putative polyprotein3.3e-0530.77Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNE-WSKSCNTKKNE------------------------------------
        EIAH+VD NPP  +EDMYHYAIKIE QL+++    KR      +G  V+  +  ++S NTKK E                                    
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNE-WSKSCNTKKNE------------------------------------

Query:  -DPVESNDVCEKHDTQLEEESRAH-DGEFIEKNNKDSDVDESNHVQVKPKTKGIVE--------NYLYKKSSNNVIVENTQC
           ++S D CE++D QLEEE     D E+IE+ +  S +     + VK K + I +          L K S  +++++N  C
Subjt:  -DPVESNDVCEKHDTQLEEESRAH-DGEFIEKNNKDSDVDESNHVQVKPKTKGIVE--------NYLYKKSSNNVIVENTQC

A0A6J1DGU9 uncharacterized protein LOC1110207532.3e-0631.85Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSK-------------------------SCNTKKNEDP----------
        EIAH VD NPPPYLEDMYHY +KIEDQL+++    KR    ++  +    N W+K                         S NTK+NE P          
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSK-------------------------SCNTKKNEDP----------

Query:  ---------------------------VESNDVCEKHDTQLEEESRAHDGEFIEKNN
                                   V+S+D CE+HD + EE     D E+IE+ N
Subjt:  ---------------------------VESNDVCEKHDTQLEEESRAHDGEFIEKNN

A0A6J1DX75 uncharacterized protein LOC1110253034.3e-0532.9Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLR----------------------KKMSIPKRLNQCNQKGSLVLPNEW-SKSCNTKKNEDP------------
        EIAH VD NPP YLEDMYHYA+KIEDQ +                      KK     R      KG  V       +S NTKKNE P            
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLR----------------------KKMSIPKRLNQCNQKGSLVLPNEW-SKSCNTKKNEDP------------

Query:  -------------------------VESNDVCEKHDTQLEEESRAHDGEFIEKNN
                                 V+S+D CE+HD   EE     D E+IE+ N
Subjt:  -------------------------VESNDVCEKHDTQLEEESRAHDGEFIEKNN

A0A6J1EVI6 LOW QUALITY PROTEIN: uncharacterized protein LOC1114384591.9e-0547.62Show/hide
Query:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSKSCNTKKNE
        EIAH+VD NPPPYLEDM HYA+KIEDQL+++    KR    ++  +      W+K     +NE
Subjt:  EIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSKSCNTKKNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTGCTCATATGGTCGATATAAATCCACCACCTTACTTGGAAGATATGTATCACTATGCTATCAAAATTGAAGATCAATTGAGGAAAAAAATGAGCATTCCAAA
AAGATTGAATCAGTGCAACCAAAAGGGAAGTTTGGTGTTGCCAAACGAGTGGAGCAAGAGCTGCAATACCAAAAAGAATGAAGATCCAGTGGAGTCGAATGACGTTTGTG
AGAAACATGATACACAACTTGAGGAAGAATCTAGAGCACATGATGGTGAATTTATTGAAAAAAATAACAAAGATTCTGATGTTGATGAAAGTAACCATGTACAAGTGAAG
CCTAAGACGAAGGGAATTGTAGAAAACTACTTGTACAAGAAGTCTTCTAACAATGTCATCGTCGAAAACACACAATGTTGTGTTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTGCTCATATGGTCGATATAAATCCACCACCTTACTTGGAAGATATGTATCACTATGCTATCAAAATTGAAGATCAATTGAGGAAAAAAATGAGCATTCCAAA
AAGATTGAATCAGTGCAACCAAAAGGGAAGTTTGGTGTTGCCAAACGAGTGGAGCAAGAGCTGCAATACCAAAAAGAATGAAGATCCAGTGGAGTCGAATGACGTTTGTG
AGAAACATGATACACAACTTGAGGAAGAATCTAGAGCACATGATGGTGAATTTATTGAAAAAAATAACAAAGATTCTGATGTTGATGAAAGTAACCATGTACAAGTGAAG
CCTAAGACGAAGGGAATTGTAGAAAACTACTTGTACAAGAAGTCTTCTAACAATGTCATCGTCGAAAACACACAATGTTGTGTTGCATAA
Protein sequenceShow/hide protein sequence
MEIAHMVDINPPPYLEDMYHYAIKIEDQLRKKMSIPKRLNQCNQKGSLVLPNEWSKSCNTKKNEDPVESNDVCEKHDTQLEEESRAHDGEFIEKNNKDSDVDESNHVQVK
PKTKGIVENYLYKKSSNNVIVENTQCCVA