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Moc05g22960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g22960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr5:16443430..16453897
RNA-Seq ExpressionMoc05g22960
SyntenyMoc05g22960
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]4.2e-1657.01Show/hide
Query:  LAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTRVNEFIVSSAFP-WELVGLSWKAERHVMNCAEGSPL
        LAI+PSL LALYA VKYSSQLNDLQLLHGNH+EHA       VV + +R         I+G        +VS  +   ELVGLSWKAE  VMN A GSPL
Subjt:  LAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTRVNEFIVSSAFP-WELVGLSWKAERHVMNCAEGSPL

Query:  LIDKEVG
        L DKE G
Subjt:  LIDKEVG
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]3.2e-1676.92Show/hide
Query:  LAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTR
        LAILPSL LA+YA VKYSSQLNDLQLL GNH+  AGRTT DKVV + LRV++LIDY EIIGITT+
Subjt:  LAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTR
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like2.0e-1657.01Show/hide
Query:  LAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTRVNEFIVSSAFP-WELVGLSWKAERHVMNCAEGSPL
        LAI+PSL LALYA VKYSSQLNDLQLLHGNH+EHA       VV + +R         I+G        +VS  +   ELVGLSWKAE  VMN A GSPL
Subjt:  LAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTRVNEFIVSSAFP-WELVGLSWKAERHVMNCAEGSPL

Query:  LIDKEVG
        L DKE G
Subjt:  LIDKEVG
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein1.6e-1676.92Show/hide
Query:  LAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTR
        LAILPSL LA+YA VKYSSQLNDLQLL GNH+  AGRTT DKVV + LRV++LIDY EIIGITT+
Subjt:  LAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTTCACAGCCGTCCGCCTTGGTCTACCGATCGTCGCTTGTAGTGGGTTGCCGTCAGATGTTGTGCGTGATCGAGTCTTCGGAGCAGATTTGATCGCGTGGGTCGC
TGAAGCATATCTGATCGCGTGGGTCACCGTCTTTCATGCTGTTGTGTATTTTAAGGAGATCGTCGGAGTGCCAGCGGGCTTGGAAGAAACTGTGAAGAAGAAGGTTGTTG
CTGCTGTCGTTCGCGTCGTTCCCTTGCGTCGTCGGAGGTCGTGGGCTTTAACAACAGGCTTCGACCTCAACTTGGATCGGATTCGATTTAACCGAAAGATAAAATGCAAC
GGACCTGGCTTTAACAACAGGCTTCAACCTCGACTTGGATCGGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGGATGATAAAATGCAACGGACCTGGCTTTAA
CAACAGGCTTCGACCTCGGCTTGGAACGGGCTTCGACCTCGGCTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAACGGACCTGACTTTAACAACAAGCTTCGAC
CTCAACTTGGATCGGGTAAGCGTGAATCACGACGTGCTGTCGTGGAGTTTGTCGGAATATGGGCTAAGCGAGACACATCTAGGTCGGTTCAAACGAAGTATGGGAATGAG
ACCAAAGGAGATCTTGGTCAACTCGGCCATAACGGACGTTGGCTCGCCATCCTGCCCTCATTAGCACTTGCACTTTATGCTTCAGTGAAGTACAGTTCTCAGTTGAATGA
CCTACAACTCCTGCATGGTAATCACAACGAACATGCGGGTCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTACAGAAGCTAATAGATTACTTTGAAATAA
TTGGGATAACAACTCGAGTCAATGAGTTTATAGTTTCTTCAGCATTTCCATGGGAACTTGTTGGCCTTTCTTGGAAAGCTGAGCGTCATGTGATGAACTGTGCTGAGGGA
AGCCCTCTTTTGATTGACAAAGAGGTGGGTCCACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTTCACAGCCGTCCGCCTTGGTCTACCGATCGTCGCTTGTAGTGGGTTGCCGTCAGATGTTGTGCGTGATCGAGTCTTCGGAGCAGATTTGATCGCGTGGGTCGC
TGAAGCATATCTGATCGCGTGGGTCACCGTCTTTCATGCTGTTGTGTATTTTAAGGAGATCGTCGGAGTGCCAGCGGGCTTGGAAGAAACTGTGAAGAAGAAGGTTGTTG
CTGCTGTCGTTCGCGTCGTTCCCTTGCGTCGTCGGAGGTCGTGGGCTTTAACAACAGGCTTCGACCTCAACTTGGATCGGATTCGATTTAACCGAAAGATAAAATGCAAC
GGACCTGGCTTTAACAACAGGCTTCAACCTCGACTTGGATCGGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGGATGATAAAATGCAACGGACCTGGCTTTAA
CAACAGGCTTCGACCTCGGCTTGGAACGGGCTTCGACCTCGGCTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAACGGACCTGACTTTAACAACAAGCTTCGAC
CTCAACTTGGATCGGGTAAGCGTGAATCACGACGTGCTGTCGTGGAGTTTGTCGGAATATGGGCTAAGCGAGACACATCTAGGTCGGTTCAAACGAAGTATGGGAATGAG
ACCAAAGGAGATCTTGGTCAACTCGGCCATAACGGACGTTGGCTCGCCATCCTGCCCTCATTAGCACTTGCACTTTATGCTTCAGTGAAGTACAGTTCTCAGTTGAATGA
CCTACAACTCCTGCATGGTAATCACAACGAACATGCGGGTCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTACAGAAGCTAATAGATTACTTTGAAATAA
TTGGGATAACAACTCGAGTCAATGAGTTTATAGTTTCTTCAGCATTTCCATGGGAACTTGTTGGCCTTTCTTGGAAAGCTGAGCGTCATGTGATGAACTGTGCTGAGGGA
AGCCCTCTTTTGATTGACAAAGAGGTGGGTCCACCCTAG
Protein sequenceShow/hide protein sequence
MWFTAVRLGLPIVACSGLPSDVVRDRVFGADLIAWVAEAYLIAWVTVFHAVVYFKEIVGVPAGLEETVKKKVVAAVVRVVPLRRRRSWALTTGFDLNLDRIRFNRKIKCN
GPGFNNRLQPRLGSGFDLDLDRVRFNRMIKCNGPGFNNRLRPRLGTGFDLGLDRVRFNRMIKCNGPDFNNKLRPQLGSGKRESRRAVVEFVGIWAKRDTSRSVQTKYGNE
TKGDLGQLGHNGRWLAILPSLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMVLRVQKLIDYFEIIGITTRVNEFIVSSAFPWELVGLSWKAERHVMNCAEG
SPLLIDKEVGPP