; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc05g24200 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g24200
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr5:17214338..17215726
RNA-Seq ExpressionMoc05g24200
SyntenyMoc05g24200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046218.1 uncharacterized protein E6C27_scaffold284G00060 [Cucumis melo var. makuwa]4.4e-2138.89Show/hide
Query:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA----------------------------------------------------
        S  KKVGE   P++R LMY D  ++ K  KSTMVDSGATHNF+TEAEA                                                    
Subjt:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA----------------------------------------------------

Query:  ---------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE
                  +H+VIPMPLAKCLV+T S P+VV   ++QP E+KMIS +QLK+GL+ D PTFMAI +   ++S E++  E
Subjt:  ---------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE

KAA0053390.1 polyprotein [Cucumis melo var. makuwa]1.2e-2144.87Show/hide
Query:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEACQHK-------------------------------------VIPMPLAKCLV
        S  KKVGE   P++R LMY D  ++ K  KSTMVDSGATHNF TEAEA +                                       VIPMPLAKCLV
Subjt:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEACQHK-------------------------------------VIPMPLAKCLV

Query:  VTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE
        +T   P+VV   ++QP  +KMISA+QLK+GL+ DEPTFMAI +   E+S E +  E
Subjt:  VTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]7.1e-2743.64Show/hide
Query:  AIRATLTHTDQRTIPHGQESIT-----HSGLRMSCL-------KKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA------------
        A +ATLT+ D+   P G E+ T         RM  L       KK  E KEPL+R LMY +  V+ KAAKSTMVDSGATHNFMTE EA            
Subjt:  AIRATLTHTDQRTIPHGQESIT-----HSGLRMSCL-------KKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA------------

Query:  -------------------------------------------------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEP
                                                          +HKVIPMPLAKCLVVT SDP VV  SIKQPS VKMISALQLK+G+A DEP
Subjt:  -------------------------------------------------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEP

Query:  TFMAIIVIDEESSTEVILSE
        TFMAI V +  +S E++  E
Subjt:  TFMAIIVIDEESSTEVILSE

XP_023524533.1 uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]3.4e-2132.42Show/hide
Query:  HLREHSSTPLKSGRSEF-HLVKLCSQLPTLSRPQ------NGRNVESAIRATLTHTDQRTIPHGQESITHSGLR-MSCLKKVGEAKEPLKRELMYEDVLV
        H + H +TPL+    +  H V  C    +L+  Q      N   VE+ +     H + R             L+ +S L++  E KE +++ LM+ D  +
Subjt:  HLREHSSTPLKSGRSEF-HLVKLCSQLPTLSRPQ------NGRNVESAIRATLTHTDQRTIPHGQESITHSGLR-MSCLKKVGEAKEPLKRELMYEDVLV

Query:  HSKAAKSTMVDSGATHNFMTEAEA-------------------------------------------------------------CQHKVIPMPLAKCLV
        +S+ +KST++DSGATHNF+ + EA                                                              +HKVIPMPLAKCLV
Subjt:  HSKAAKSTMVDSGATHNFMTEAEA-------------------------------------------------------------CQHKVIPMPLAKCLV

Query:  VTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE
        +T  +PTV+P SIKQP  ++MISA+QLKRGLA +EPTFMAI +I+E ++ E +  E
Subjt:  VTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]3.4e-2132.42Show/hide
Query:  HLREHSSTPLKSGRSEF-HLVKLCSQLPTLSRPQ------NGRNVESAIRATLTHTDQRTIPHGQESITHSGLR-MSCLKKVGEAKEPLKRELMYEDVLV
        H + H +TPL+    +  H V  C    +L+  Q      N   VE+ +     H + R             L+ +S L++  E KE +++ LM+ D  +
Subjt:  HLREHSSTPLKSGRSEF-HLVKLCSQLPTLSRPQ------NGRNVESAIRATLTHTDQRTIPHGQESITHSGLR-MSCLKKVGEAKEPLKRELMYEDVLV

Query:  HSKAAKSTMVDSGATHNFMTEAEA-------------------------------------------------------------CQHKVIPMPLAKCLV
        +S+ +KST++DSGATHNF+ + EA                                                              +HKVIPMPLAKCLV
Subjt:  HSKAAKSTMVDSGATHNFMTEAEA-------------------------------------------------------------CQHKVIPMPLAKCLV

Query:  VTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE
        +T  +PTV+P SIKQP  ++MISA+QLKRGLA +EPTFMAI +I+E ++ E +  E
Subjt:  VTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE

TrEMBL top hitse value%identityAlignment
A0A5A7UAP7 Reverse transcriptase domain-containing protein2.1e-2139.44Show/hide
Query:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA----------------------------------------------------
        S  KKVGE   P++R LMY D  ++ K +KSTMVDSGATHNF+TEAEA                                                    
Subjt:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA----------------------------------------------------

Query:  ---------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE
                  +H+VIPMPLAKCLV+T   P+VV   ++QP  +KMISA+QLK+GL+ DEPTFMAI +   E+S E +  E
Subjt:  ---------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE

A0A5A7UDW8 Polyprotein5.6e-2244.87Show/hide
Query:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEACQHK-------------------------------------VIPMPLAKCLV
        S  KKVGE   P++R LMY D  ++ K  KSTMVDSGATHNF TEAEA +                                       VIPMPLAKCLV
Subjt:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEACQHK-------------------------------------VIPMPLAKCLV

Query:  VTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE
        +T   P+VV   ++QP  +KMISA+QLK+GL+ DEPTFMAI +   E+S E +  E
Subjt:  VTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE

A0A5D3B9T5 Reverse transcriptase domain-containing protein3.7e-2139.44Show/hide
Query:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA----------------------------------------------------
        S  KKVGE   P++R LMY D  ++ K  KSTMVDSGATHNF+TEAEA                                                    
Subjt:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA----------------------------------------------------

Query:  ---------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE
                  +H+VIPMPLAKCLV+T   P+VV   ++QP  +KMISA+QLK+GL+ DEPTFMAI +   E+S E +  E
Subjt:  ---------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE

A0A5D3D5Z1 Uncharacterized protein2.1e-2138.89Show/hide
Query:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA----------------------------------------------------
        S  KKVGE   P++R LMY D  ++ K  KSTMVDSGATHNF+TEAEA                                                    
Subjt:  SCLKKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA----------------------------------------------------

Query:  ---------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE
                  +H+VIPMPLAKCLV+T S P+VV   ++QP E+KMIS +QLK+GL+ D PTFMAI +   ++S E++  E
Subjt:  ---------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSE

A0A6J1DLQ6 uncharacterized protein LOC1110223203.4e-2743.64Show/hide
Query:  AIRATLTHTDQRTIPHGQESIT-----HSGLRMSCL-------KKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA------------
        A +ATLT+ D+   P G E+ T         RM  L       KK  E KEPL+R LMY +  V+ KAAKSTMVDSGATHNFMTE EA            
Subjt:  AIRATLTHTDQRTIPHGQESIT-----HSGLRMSCL-------KKVGEAKEPLKRELMYEDVLVHSKAAKSTMVDSGATHNFMTEAEA------------

Query:  -------------------------------------------------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEP
                                                          +HKVIPMPLAKCLVVT SDP VV  SIKQPS VKMISALQLK+G+A DEP
Subjt:  -------------------------------------------------CQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEP

Query:  TFMAIIVIDEESSTEVILSE
        TFMAI V +  +S E++  E
Subjt:  TFMAIIVIDEESSTEVILSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGTGGGGCCCCTTGTTCAAGTCCCGGAGTCAGCATTTAAGAGAACACTCATCTACTCCCCTAAAGTCGGGGAGGAGTGAATTTCATCTTGTGAAGTTATGTTC
CCAGCTCCCCACTCTGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCAGCGATTCGGGCCACTCTCACCCATACAGATCAAAGGACGATCCCTCACGGGCAGGAGTCCA
TAACTCACTCAGGATTGAGAATGAGTTGCCTGAAGAAAGTAGGGGAAGCAAAAGAACCGCTAAAGAGAGAGCTCATGTATGAGGACGTGTTGGTTCACAGTAAAGCTGCT
AAGAGTACTATGGTGGATTCTGGAGCCACACACAACTTCATGACCGAAGCCGAGGCTTGCCAGCACAAAGTCATCCCCATGCCCCTAGCAAAGTGCCTAGTTGTTACTAG
ATCTGATCCCACCGTTGTTCCGATGAGCATAAAACAACCAAGTGAGGTTAAGATGATATCAGCTCTGCAGTTGAAGAGGGGCCTTGCTCACGACGAACCAACATTTATGG
CCATCATAGTGATCGACGAAGAGAGCAGTACAGAAGTAATTCTCAGTGAGTCCAACAAGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGTGGGGCCCCTTGTTCAAGTCCCGGAGTCAGCATTTAAGAGAACACTCATCTACTCCCCTAAAGTCGGGGAGGAGTGAATTTCATCTTGTGAAGTTATGTTC
CCAGCTCCCCACTCTGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCAGCGATTCGGGCCACTCTCACCCATACAGATCAAAGGACGATCCCTCACGGGCAGGAGTCCA
TAACTCACTCAGGATTGAGAATGAGTTGCCTGAAGAAAGTAGGGGAAGCAAAAGAACCGCTAAAGAGAGAGCTCATGTATGAGGACGTGTTGGTTCACAGTAAAGCTGCT
AAGAGTACTATGGTGGATTCTGGAGCCACACACAACTTCATGACCGAAGCCGAGGCTTGCCAGCACAAAGTCATCCCCATGCCCCTAGCAAAGTGCCTAGTTGTTACTAG
ATCTGATCCCACCGTTGTTCCGATGAGCATAAAACAACCAAGTGAGGTTAAGATGATATCAGCTCTGCAGTTGAAGAGGGGCCTTGCTCACGACGAACCAACATTTATGG
CCATCATAGTGATCGACGAAGAGAGCAGTACAGAAGTAATTCTCAGTGAGTCCAACAAGTCCTAG
Protein sequenceShow/hide protein sequence
MKEWGPLFKSRSQHLREHSSTPLKSGRSEFHLVKLCSQLPTLSRPQNGRNVESAIRATLTHTDQRTIPHGQESITHSGLRMSCLKKVGEAKEPLKRELMYEDVLVHSKAA
KSTMVDSGATHNFMTEAEACQHKVIPMPLAKCLVVTRSDPTVVPMSIKQPSEVKMISALQLKRGLAHDEPTFMAIIVIDEESSTEVILSESNKS