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Moc05g24330 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g24330
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:17291694..17295385
RNA-Seq ExpressionMoc05g24330
SyntenyMoc05g24330
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149417.1 protein NYNRIN-like [Momordica charantia]2.7e-2170.67Show/hide
Query:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED
        +D P +I + ++M++DTP  SW+DPIVEFIKGNPPQD KE KK+ARRAARF LR+GALYR+GFSLPL KCVTPE+
Subjt:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED

XP_022155184.1 uncharacterized protein LOC111022318 [Momordica charantia]3.8e-2371.43Show/hide
Query:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPEDRV
        +D P  + QD +M++DTP  SWMDPIVEFIKGNPPQDSKE KK+AR+  RFILRDGALYR+GFSLPL KCVTPE+ +
Subjt:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPEDRV

XP_022155869.1 uncharacterized protein LOC111022882 [Momordica charantia]6.0e-2169.33Show/hide
Query:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED
        +D P +I + ++M++DTP  +WMDPIVEFIKGNPPQD KE KK+ARRAARF LR+G LYR+GFSLPL KCVTPE+
Subjt:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED

XP_022158092.1 uncharacterized protein LOC111024661 [Momordica charantia]3.2e-2273.33Show/hide
Query:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED
        +D P +I + ++M+IDTP  SWMDPI+EFIKGNPPQDSKE K++ARRAARFILRDG LYR+GFSLPL KCVTPE+
Subjt:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED

XP_022158589.1 uncharacterized protein LOC111025045 [Momordica charantia]7.1e-2267.44Show/hide
Query:  FSGESVSLEGCIDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED
        +   SVS+E  +D P +I + ++M++DTP  SWMDPIVEFIKGN PQDSKE KK+AR+AARFILRD ALYR+GFSLPL KCVTPE+
Subjt:  FSGESVSLEGCIDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED

TrEMBL top hitse value%identityAlignment
A0A6J1D7W6 Ribonuclease H1.3e-2170.67Show/hide
Query:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED
        +D P +I + ++M++DTP  SW+DPIVEFIKGNPPQD KE KK+ARRAARF LR+GALYR+GFSLPL KCVTPE+
Subjt:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED

A0A6J1DPI3 Ribonuclease H1.8e-2371.43Show/hide
Query:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPEDRV
        +D P  + QD +M++DTP  SWMDPIVEFIKGNPPQDSKE KK+AR+  RFILRDGALYR+GFSLPL KCVTPE+ +
Subjt:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPEDRV

A0A6J1DWA1 Ribonuclease H1.6e-2273.33Show/hide
Query:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED
        +D P +I + ++M+IDTP  SWMDPI+EFIKGNPPQDSKE K++ARRAARFILRDG LYR+GFSLPL KCVTPE+
Subjt:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED

A0A6J1DWH1 uncharacterized protein LOC1110241322.9e-2173.33Show/hide
Query:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED
        +D P T+  D MMDIDT V +W DPI+EFIK NPPQD KE+KK+ARRAARFILRDGALYR+GFSL L KCVTPE+
Subjt:  IDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED

A0A6J1DZV0 uncharacterized protein LOC1110250453.5e-2267.44Show/hide
Query:  FSGESVSLEGCIDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED
        +   SVS+E  +D P +I + ++M++DTP  SWMDPIVEFIKGN PQDSKE KK+AR+AARFILRD ALYR+GFSLPL KCVTPE+
Subjt:  FSGESVSLEGCIDLPVTIGQDNMMDIDTPVHSWMDPIVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGACCTGCGGTTATCAACACCATTTTCGGAGGCCCAAGTGGAGGCCAGTCTGGAAATAAGAGGAAGTAGTTGGCTCGAGAAGCCAGGCGCGAGAGTATTG
GTAGATGGTGGTGCATATGCCAATACTCTATCTCTTACAACATATCTTGCTTTGGGATGGACCATGGCACAATTGAAGAAGAGTCCAACACCTTTGGTTGGATTT
TCGGGGGAATCAGTCTCCCTAGAAGGGTGTATTGACTTACCGGTTACGATTGGGCAGGACAACATGATGGATATTGACACACCAGTGCACTCATGGATGGATCCA
ATTGTGGAGTTTATCAAAGGAAACCCACCGCAAGACTCAAAAGAATACAAGAAGATCGCACGAAGAGCAGCCCGGTTCATACTCCGTGATGGGGCATTGTACCGG
CAAGGGTTCTCCCTGCCCCTCCATAAGTGTGTAACTCCTGAAGACAGGGTAGAGCAGTACGAACCAATGAGAAACGAGGAAGAACTGCTCCTCAACCTTGACTTA
TTAGAAGAAAAGAGGGAAATGGCTCAACTATGTTTGGCAGAGTACCAAAACAGAATGGCTAGACATTACAATGCCGAGTCTGACCTCGAAGTTTTCAAGTCGGGC
ATTTGGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCGACCTGCGGTTATCAACACCATTTTCGGAGGCCCAAGTGGAGGCCAGTCTGGAAATAAGAGGAAGTAGTTGGCTCGAGAAGCCAGGCGCGAGAGTATTG
GTAGATGGTGGTGCATATGCCAATACTCTATCTCTTACAACATATCTTGCTTTGGGATGGACCATGGCACAATTGAAGAAGAGTCCAACACCTTTGGTTGGATTT
TCGGGGGAATCAGTCTCCCTAGAAGGGTGTATTGACTTACCGGTTACGATTGGGCAGGACAACATGATGGATATTGACACACCAGTGCACTCATGGATGGATCCA
ATTGTGGAGTTTATCAAAGGAAACCCACCGCAAGACTCAAAAGAATACAAGAAGATCGCACGAAGAGCAGCCCGGTTCATACTCCGTGATGGGGCATTGTACCGG
CAAGGGTTCTCCCTGCCCCTCCATAAGTGTGTAACTCCTGAAGACAGGGTAGAGCAGTACGAACCAATGAGAAACGAGGAAGAACTGCTCCTCAACCTTGACTTA
TTAGAAGAAAAGAGGGAAATGGCTCAACTATGTTTGGCAGAGTACCAAAACAGAATGGCTAGACATTACAATGCCGAGTCTGACCTCGAAGTTTTCAAGTCGGGC
ATTTGGTCTTAA
Protein sequenceShow/hide protein sequence
MTDLRLSTPFSEAQVEASLEIRGSSWLEKPGARVLVDGGAYANTLSLTTYLALGWTMAQLKKSPTPLVGFSGESVSLEGCIDLPVTIGQDNMMDIDTPVHSWMDP
IVEFIKGNPPQDSKEYKKIARRAARFILRDGALYRQGFSLPLHKCVTPEDRVEQYEPMRNEEELLLNLDLLEEKREMAQLCLAEYQNRMARHYNAESDLEVFKSG
IWS