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Moc05g24670 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g24670
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:17536562..17537349
RNA-Seq ExpressionMoc05g24670
SyntenyMoc05g24670
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150318.1 uncharacterized protein LOC111018515 [Momordica charantia]1.3e-1983.33Show/hide
Query:  MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWY
        M YPLPLKMKKPDMKPYDGSTDP+DHI LYEGLMEL+   DEMK  AFSVTLKGQA SWY
Subjt:  MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWY

XP_022151609.1 uncharacterized protein LOC111019523 [Momordica charantia]4.1e-3746.67Show/hide
Query:  MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------------------------
        M YPLP KMKKPDMKPYD   +P+DHIELYEGLMELS   D+MK  AFSVTLKG+A SWYRQLK KSI  W QLRK                        
Subjt:  MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------------------------

Query:  ------------------------------------------------PARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTSKHVQARGQSLPSKKSYSS
                                                        P R+Y+EAIQRAR+YMHAEDVL+ K LQHQ  TSKHV+ARGQS  SKKS+S 
Subjt:  ------------------------------------------------PARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTSKHVQARGQSLPSKKSYSS

Query:  REPKQKKSTYDNRQRQKQTTQVHDR
        R+ + +K+ +D+R RQ+ T  V+DR
Subjt:  REPKQKKSTYDNRQRQKQTTQVHDR

XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]4.1e-1330.99Show/hide
Query:  LPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------PARSYSEAI------------Q
        +PLK K P MKPYDGS DP D++E++EGLM+   A D +K   F + L G A  WYR+L  +SI ++ QLRK       +R Y                +
Subjt:  LPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------PARSYSEAI------------Q

Query:  RARQYMH-------------------------AEDVLRAKHLQHQPVTSKHVQAR------GQSL-------PSKKSYSSREPKQKKSTYDNRQRQKQTT
          R+Y+                          A++ L  K  +  P T   V  +      GQ L       P KK    R  K K  T D++ R K  +
Subjt:  RARQYMH-------------------------AEDVLRAKHLQHQPVTSKHVQAR------GQSL-------PSKKSYSSREPKQKKSTYDNRQRQKQTT

Query:  QV----------HDRRLREFDRYTPLTIPLSEIIVDIENSDL
                    + RR R ++RYTP TIP+SEI+ +IE + +
Subjt:  QV----------HDRRLREFDRYTPLTIPLSEIIVDIENSDL

XP_022155997.1 uncharacterized protein LOC111022972 [Momordica charantia]4.3e-1850.93Show/hide
Query:  KPARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTSKHVQARGQSLPSKKSYSSREPKQKKSTYDNRQRQKQTTQVHDRRLREFDRYTPLTIPLSEIIVDI
        +P  +YSEAIQRARQ+MHA+D+L+AKHLQ+Q +TSK+ ++R      KK +S++    K++  DNR    +T  V +RRLREFD+YTPL +P++EI+ +I
Subjt:  KPARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTSKHVQARGQSLPSKKSYSSREPKQKKSTYDNRQRQKQTTQVHDRRLREFDRYTPLTIPLSEIIVDI

Query:  ENSDLHTV
        E+ DLHT+
Subjt:  ENSDLHTV

XP_022159327.1 uncharacterized protein LOC111025738 [Momordica charantia]1.0e-1150Show/hide
Query:  LPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRKPARS
        +P K K P MKPYDGS DP D++E++EGLM    A D +KY AF + L   A  WYR+L  +SI ++ QLRK   S
Subjt:  LPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRKPARS

TrEMBL top hitse value%identityAlignment
A0A6J1D949 uncharacterized protein LOC1110185156.4e-2083.33Show/hide
Query:  MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWY
        M YPLPLKMKKPDMKPYDGSTDP+DHI LYEGLMEL+   DEMK  AFSVTLKGQA SWY
Subjt:  MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWY

A0A6J1D9W7 uncharacterized protein LOC1110187081.9e-1128.1Show/hide
Query:  PLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------PARSYSEAIQ-----------
        P+P K K P +KPYDGS DP D++E++EGLM+   A D +K  AF + L G A  WYR+L  +SI ++ QLR+       +R Y +  +           
Subjt:  PLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------PARSYSEAIQ-----------

Query:  -RARQYMH-------------------------AEDVLRAKHLQHQPVTSKHVQAR------GQSL---------------PSKKSYSSREPKQK-KSTY
           R+Y+                          A++ L  K  +  P T   V  +      GQ L                S K     +PK K K ++
Subjt:  -RARQYMH-------------------------AEDVLRAKHLQHQPVTSKHVQAR------GQSL---------------PSKKSYSSREPKQK-KSTY

Query:  DNRQRQKQTTQVHDRRLREFDRYTPLTIPLSEIIVDIENSDL
         + + + +  +    + R ++R+TP TIP+SEI+ +IE S +
Subjt:  DNRQRQKQTTQVHDRRLREFDRYTPLTIPLSEIIVDIENSDL

A0A6J1DDJ7 uncharacterized protein LOC1110195232.0e-3746.67Show/hide
Query:  MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------------------------
        M YPLP KMKKPDMKPYD   +P+DHIELYEGLMELS   D+MK  AFSVTLKG+A SWYRQLK KSI  W QLRK                        
Subjt:  MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------------------------

Query:  ------------------------------------------------PARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTSKHVQARGQSLPSKKSYSS
                                                        P R+Y+EAIQRAR+YMHAEDVL+ K LQHQ  TSKHV+ARGQS  SKKS+S 
Subjt:  ------------------------------------------------PARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTSKHVQARGQSLPSKKSYSS

Query:  REPKQKKSTYDNRQRQKQTTQVHDR
        R+ + +K+ +D+R RQ+ T  V+DR
Subjt:  REPKQKKSTYDNRQRQKQTTQVHDR

A0A6J1DDW5 uncharacterized protein LOC1110196342.0e-1330.99Show/hide
Query:  LPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------PARSYSEAI------------Q
        +PLK K P MKPYDGS DP D++E++EGLM+   A D +K   F + L G A  WYR+L  +SI ++ QLRK       +R Y                +
Subjt:  LPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRK------PARSYSEAI------------Q

Query:  RARQYMH-------------------------AEDVLRAKHLQHQPVTSKHVQAR------GQSL-------PSKKSYSSREPKQKKSTYDNRQRQKQTT
          R+Y+                          A++ L  K  +  P T   V  +      GQ L       P KK    R  K K  T D++ R K  +
Subjt:  RARQYMH-------------------------AEDVLRAKHLQHQPVTSKHVQAR------GQSL-------PSKKSYSSREPKQKKSTYDNRQRQKQTT

Query:  QV----------HDRRLREFDRYTPLTIPLSEIIVDIENSDL
                    + RR R ++RYTP TIP+SEI+ +IE + +
Subjt:  QV----------HDRRLREFDRYTPLTIPLSEIIVDIENSDL

A0A6J1DQW1 uncharacterized protein LOC1110229722.1e-1850.93Show/hide
Query:  KPARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTSKHVQARGQSLPSKKSYSSREPKQKKSTYDNRQRQKQTTQVHDRRLREFDRYTPLTIPLSEIIVDI
        +P  +YSEAIQRARQ+MHA+D+L+AKHLQ+Q +TSK+ ++R      KK +S++    K++  DNR    +T  V +RRLREFD+YTPL +P++EI+ +I
Subjt:  KPARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTSKHVQARGQSLPSKKSYSSREPKQKKSTYDNRQRQKQTTQVHDRRLREFDRYTPLTIPLSEIIVDI

Query:  ENSDLHTV
        E+ DLHT+
Subjt:  ENSDLHTV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATCCTCTCCCACTGAAAATGAAAAAGCCAGACATGAAACCGTATGATGGATCCACAGACCCGGTAGATCACATCGAGTTGTATGAAGGTCTAATGGAACTAAG
TGTGGCGAGGGATGAGATGAAGTACATAGCTTTTTCTGTCACCTTGAAGGGTCAAGCTTGCTCGTGGTATCGGCAGCTGAAACCCAAGTCTATCGGCTCCTGGAGACAGT
TGAGAAAACCAGCTCGGTCCTATAGCGAAGCTATCCAACGTGCACGTCAATATATGCATGCAGAAGATGTGCTCCGAGCAAAACATCTGCAACATCAGCCAGTTACATCC
AAGCATGTCCAAGCTCGGGGGCAGAGTTTGCCGTCGAAAAAGAGTTATTCAAGCCGCGAACCTAAGCAAAAGAAGTCAACTTATGACAATCGACAGCGACAAAAGCAGAC
AACACAAGTTCATGATCGTCGTTTGAGGGAATTCGACCGGTATACACCTCTTACTATTCCACTCTCAGAAATTATAGTCGATATCGAGAATAGCGACTTGCACACTGTTG
GGTGTGTTGCCTTATACTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATCCTCTCCCACTGAAAATGAAAAAGCCAGACATGAAACCGTATGATGGATCCACAGACCCGGTAGATCACATCGAGTTGTATGAAGGTCTAATGGAACTAAG
TGTGGCGAGGGATGAGATGAAGTACATAGCTTTTTCTGTCACCTTGAAGGGTCAAGCTTGCTCGTGGTATCGGCAGCTGAAACCCAAGTCTATCGGCTCCTGGAGACAGT
TGAGAAAACCAGCTCGGTCCTATAGCGAAGCTATCCAACGTGCACGTCAATATATGCATGCAGAAGATGTGCTCCGAGCAAAACATCTGCAACATCAGCCAGTTACATCC
AAGCATGTCCAAGCTCGGGGGCAGAGTTTGCCGTCGAAAAAGAGTTATTCAAGCCGCGAACCTAAGCAAAAGAAGTCAACTTATGACAATCGACAGCGACAAAAGCAGAC
AACACAAGTTCATGATCGTCGTTTGAGGGAATTCGACCGGTATACACCTCTTACTATTCCACTCTCAGAAATTATAGTCGATATCGAGAATAGCGACTTGCACACTGTTG
GGTGTGTTGCCTTATACTCATAG
Protein sequenceShow/hide protein sequence
MTYPLPLKMKKPDMKPYDGSTDPVDHIELYEGLMELSVARDEMKYIAFSVTLKGQACSWYRQLKPKSIGSWRQLRKPARSYSEAIQRARQYMHAEDVLRAKHLQHQPVTS
KHVQARGQSLPSKKSYSSREPKQKKSTYDNRQRQKQTTQVHDRRLREFDRYTPLTIPLSEIIVDIENSDLHTVGCVALYS