CuGenDBv2

Gene ID	Moc05g24860
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Eukaryotic translation initiation factor 6
Genome location	chr5:17701796..17706089
RNA-Seq Expression	Moc05g24860
Synteny	Moc05g24860
Gene Ontology terms	GO:0000054 - ribosomal subunit export from nucleus (biological process) GO:0000460 - maturation of 5.8S rRNA (biological process) GO:0000470 - maturation of LSU-rRNA (biological process) GO:0006413 - translational initiation (biological process) GO:0042256 - mature ribosome assembly (biological process) GO:1902626 - assembly of large subunit precursor of preribosome (biological process) GO:0005730 - nucleolus (cellular component) GO:0005829 - cytosol (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR002769 - Translation initiation factor IF6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022147757.1 eukaryotic translation initiation factor 6-2 [Momordica charantia]

1.6e-83

100

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

XP_022148877.1 eukaryotic translation initiation factor 6-2-like, partial [Momordica charantia]

1.7e-82

98.77

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGLTANDW AFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

XP_022973842.1 eukaryotic translation initiation factor 6-2 [Cucurbita maxima]

1.9e-81

97.55

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTI+CNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGL ANDW AFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

XP_038880643.1 eukaryotic translation initiation factor 6-2-like [Benincasa hispida]

1.7e-82

98.16

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTS+EDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

XP_038900322.1 eukaryotic translation initiation factor 6-2 [Benincasa hispida]

6.6e-82

97.55

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTS+EDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGLTANDW AFCGSDTTATELSVIESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D392 Eukaryotic translation initiation factor 6

7.6e-84

100

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

A0A6J1D683 Eukaryotic translation initiation factor 6

8.4e-83

98.77

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGLTANDW AFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

A0A6J1G8F7 Eukaryotic translation initiation factor 6

1.6e-81

96.93

Show/hide

Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGL  NDW AFCGSDTTATELSV+ESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

A0A6J1I8L9 Eukaryotic translation initiation factor 6

9.3e-82

97.55

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTI+CNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGL ANDW AFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

A0A6J1L2F0 Eukaryotic translation initiation factor 6

1.6e-81

96.93

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAGL  NDW AFCGSDTTATELSV+ESVFKLREAQPSSIVDEMRKSLIDSYV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

SwissProt top hits

e value

%identity

Alignment

O55135 Eukaryotic translation initiation factor 6

2.6e-65

76.4

Show/hide

Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        H+RNSLPD V ++R++ERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TSIED DELS+LLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS
        AGTVNRGSEVIAAG+  NDW AFCG DTT+TELSV+ESVFKL EA+PS+I   MR SLIDS
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS

P56537 Eukaryotic translation initiation factor 6

1.2e-65

77.02

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        H+RNSLPD V ++R++ERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TSIED DELS+LLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS
        AGTVNRGSEVIAAG+  NDW AFCG DTT+TELSV+ESVFKL EAQPS+I   MR SLIDS
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS

Q3KRD8 Eukaryotic translation initiation factor 6

2.6e-65

76.4

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        H+RNSLPD V ++R++ERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TSIED DELS+LLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS
        AGTVNRGSEVIAAG+  NDW AFCG DTT+TELSV+ESVFKL EA+PS+I   MR SLIDS
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS

Q6GR45 Eukaryotic translation initiation factor 6

1.5e-65

76.4

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        H+RNSLPD V +QR++ERLSALGN IACND+VAL H DLDRETEE++ADVL VEVFRQT+A  VLVGSYC+F+N+GGL+HP TSIED DELS+LLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS
         GTVNRGSEVIAAG+  NDW AFCG DTT+TELSVIESVFKL +A PS+I   MR SLIDS
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDS

Q9M060 Eukaryotic translation initiation factor 6-2

1.6e-78

87.12

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Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRI ERLSALGN IACND+VALAHTDLD+ETEE+IADVLGVEVFRQT+AGN+LVGSYC+ +N+GG+VHPHTS+EDL+ELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAG+T NDW +FCGSDTTATELSVI+S+FKLREAQPSSIVDEMRKSLID+YV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39820.1 Translation initiation factor IF6

2.1e-62

68.1

Show/hide

Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLR+SLPD+VVVQRI+E + ALGN IACND+VAL H  L+++TEE+I+DVLGVEV+RQT+A N LVGSYCS +N GG+VH +T++E++ EL+ L+QVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGS+VI+AGLT NDW AFCGSDTTA ELSV+ ++FKL ++QP  +  EMRKSLID+YV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

AT3G55620.1 Translation initiation factor IF6

1.1e-79

87.12

Show/hide

Query:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV
        HLRNSLPDQVVVQRI ERLSALGN IACND+VALAHTDLD+ETEE+IADVLGVEVFRQT+AGN+LVGSYC+ +N+GG+VHPHTS+EDL+ELSTLLQVPLV
Subjt:  HLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLV

Query:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV
        AGTVNRGSEVIAAG+T NDW +FCGSDTTATELSVI+S+FKLREAQPSSIVDEMRKSLID+YV
Subjt:  AGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCATGTTTCCTGGTATGAAGAGCAAAAAGGAGGGGCACTTGAGGAACAGTCTACCCGACCAAGTTGTTGTTCAACGCATACAAGAGAGACTATCTGCTTTA
GGGAATACCATTGCTTGTAATGATCATGTTGCTCTCGCACATACTGATCTTGACCGGGAAACTGAAGAACTCATTGCTGATGTTCTCGGAGTAGAGGTCTTTAGG
CAGACGGTGGCGGGTAACGTTCTTGTGGGAAGCTACTGCAGCTTCACAAATAGGGGTGGCTTGGTTCATCCCCATACGTCTATTGAAGATTTGGACGAATTATCA
ACCCTTCTTCAGGTCCCTTTAGTAGCCGGAACTGTCAATCGTGGAAGTGAAGTGATTGCTGCTGGCTTAACAGCAAATGACTGGATTGCATTTTGTGGTTCAGAC
ACTACTGCAACCGAGTTATCGGTGATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCGAGTTCGATTGTTGACGAGATGAGGAAGTCACTAATTGACAGTTAC
GTTTGA

mRNA sequence

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Protein sequence

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MAMFPGMKSKKEGHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSIEDLDELS
TLLQVPLVAGTVNRGSEVIAAGLTANDWIAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV

Moc05g24860 (gene) of Bitter gourd (OHB3-1) v2 genome