CuGenDBv2

Gene ID	Moc05g24880
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Eukaryotic translation initiation factor 6
Genome location	chr5:17708189..17710364
RNA-Seq Expression	Moc05g24880
Synteny	Moc05g24880
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0042256 - mature ribosome assembly (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR002769 - Translation initiation factor IF6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022147757.1 eukaryotic translation initiation factor 6-2 [Momordica charantia]

1.0e-36

100

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

XP_022158453.1 eukaryotic translation initiation factor 6-2-like [Momordica charantia]

5.3e-41

93.33

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQGKPLFYFLVLF
        MATRLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCAGNKNGLLVPHTTTDQGK LFYFLV+F
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQGKPLFYFLVLF

XP_022931983.1 eukaryotic translation initiation factor 6-2-like [Cucurbita moschata]

3.0e-36

98.73

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVK SIDGTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

XP_022973842.1 eukaryotic translation initiation factor 6-2 [Cucurbita maxima]

3.0e-36

98.73

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVK SIDGTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

XP_038880643.1 eukaryotic translation initiation factor 6-2-like [Benincasa hispida]

2.3e-36

98.73

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFE+ELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BPM8 Eukaryotic translation initiation factor 6

6.1e-35

96.2

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFE+EL GVIPVVKASI GTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

A0A6J1D392 Eukaryotic translation initiation factor 6

5.0e-37

100

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

A0A6J1DW46 eukaryotic translation initiation factor 6-2-like

2.5e-41

93.33

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQGKPLFYFLVLF
        MATRLMFENSCE+GVFSKLTNAYCLVAIGGSENFYSAFE+ELGG+IPVVK SIDGTRIIGRLCAGNKNGLLVPHTTTDQGK LFYFLV+F
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQGKPLFYFLVLF

A0A6J1F0A8 Eukaryotic translation initiation factor 6

1.4e-36

98.73

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVK SIDGTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

A0A6J1I8L9 Eukaryotic translation initiation factor 6

1.4e-36

98.73

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVK SIDGTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

SwissProt top hits

e value

%identity

Alignment

O55135 Eukaryotic translation initiation factor 6

4.1e-28

73.42

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MA R  FEN+CE+G F+KLTNAYCLVAIGGSENFYS FE EL   IPVV ASI G RIIGR+C GN++GLLVP+ TTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

O81920 Eukaryotic translation initiation factor 6 (Fragment)

4.3e-30

81.01

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRL FEN+CE+GVFSKLTNAYCLVAIGGSENFYS FE+EL   IPVVK SI GTRIIG     NKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

Q12522 Eukaryotic translation initiation factor 6

5.3e-28

75.95

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATR  FENS EIGVFSKLTN YCLVA+GGSENFYSAFE+ELG  IP+V  +I GTRIIGR+ AGN+ GLLVP  TTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

Q9M060 Eukaryotic translation initiation factor 6-2

1.2e-35

89.87

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRL FEN+CE+GVFSKLTNAYCLVAIGGSENFYSAFESEL  VIP+VK SI GTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

Q9TU47 Eukaryotic translation initiation factor 6

1.1e-28

74.68

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MA R  FEN+CEIG F+KLTN+YCLVAIGGSENFYS FE EL G IPVV ASI G RIIGR+C GN++GLLVP+ TTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G39820.1 Translation initiation factor IF6

1.4e-23

65.43

Show/hide

Query:  MATRLMFE-NSCEIGVFSKLTNAYCLV-AIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRL ++ N+CEIGVFSKLTNAYCLV A   S NF++ +ES+L GVIP+V  SI G+  IG LC GNKNGLL+ HT TDQ
Subjt:  MATRLMFE-NSCEIGVFSKLTNAYCLV-AIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

AT3G55620.1 Translation initiation factor IF6

8.4e-37

89.87

Show/hide

Query:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ
        MATRL FEN+CE+GVFSKLTNAYCLVAIGGSENFYSAFESEL  VIP+VK SI GTRIIGRLCAGNKNGLLVPHTTTDQ
Subjt:  MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGACGAGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAACTCACTAATGCTTACTGTTTGGTTGCAATTGGTGGCTCTGAGAACTTCTAC
AGTGCCTTCGAATCTGAATTGGGTGGTGTCATTCCGGTTGTTAAAGCATCCATTGATGGCACTCGCATTATTGGCCGCTTATGTGCTGGAAACAAAAATGGGCTT
CTTGTACCCCACACCACTACTGATCAAGGCAAGCCTCTTTTCTACTTTCTTGTTCTTTTTATGAATGTCTATGGTGGATGGTCTACCATTCAGGAGCAAGGGTTG
GAATTTGTGGCAAGCTGGCTTCTTTGCCGTCCTTTGGGGCCTTTGGCTAGGGAGGAACAATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFESELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQGKPLFYFLVLFMNVYGGWSTIQEQGL
EFVASWLLCRPLGPLAREEQ

Moc05g24880 (gene) of Bitter gourd (OHB3-1) v2 genome