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Moc05g24960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g24960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:17781431..17782476
RNA-Seq ExpressionMoc05g24960
SyntenyMoc05g24960
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]4.1e-3264.6Show/hide
Query:  HNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMD
        H   N +A+S   P  P G+I R+EFD LKSKFD QVEALK KC+KKES+FDD    +SPFT ++L+A IP KFK PTMK YDG  +PKDYVEVFEGLMD
Subjt:  HNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMD

Query:  FKSASDAIKCRAF
        F++A+DAIKCR F
Subjt:  FKSASDAIKCRAF

XP_022155128.1 uncharacterized protein LOC111022267 [Momordica charantia]5.0e-3061.95Show/hide
Query:  HNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMD
        H   N +A+S   P  P  +I R+EFD LKSKFD QVEALK  C+KKES+FDD    + PFT ++L+API  KFK PTMK YDG  NPKDYV+VFEGLM+
Subjt:  HNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMD

Query:  FKSASDAIKCRAF
        F++A+DAIKCRAF
Subjt:  FKSASDAIKCRAF

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]1.3e-3053.19Show/hide
Query:  DENCNYHSASEGHTSKFEGIDSHGGDDLHNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPN
        D +   H   +   + +E  DS       +  N KAQS+  P  P  +I R+EFDL+K +FD QVEALK +C+KKES FDD    +SPFT ++++APIP 
Subjt:  DENCNYHSASEGHTSKFEGIDSHGGDDLHNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPN

Query:  KFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF
        KFK PTMK YDG  +PKDYVEVFEGLMDF++A+DAIKC AF
Subjt:  KFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF

XP_022156088.1 uncharacterized protein LOC111023060 [Momordica charantia]2.6e-3448.4Show/hide
Query:  RMRTMEESYNNMLNTTRLDSTAPHPLYPDEENECLDLEDARNEDENCNYHSASEGHTSKFEGIDSHGGDDL----HNKLNDKAQSRLVPSKPHGLIIRKE
        +MRTMEE YN M+      S +   +  ++ +E  DL     ++E+         H ++     SH G+      H   N +A+S   P  P G+I R+E
Subjt:  RMRTMEESYNNMLNTTRLDSTAPHPLYPDEENECLDLEDARNEDENCNYHSASEGHTSKFEGIDSHGGDDL----HNKLNDKAQSRLVPSKPHGLIIRKE

Query:  FDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF
        F+ LKSKFD QVEALK++C+KKESAFDD    +SPFT ++L+A IP KFK PTMK YDG  +PKDYVEVFEGLMDF++A+DAIKCRAF
Subjt:  FDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF

XP_022157897.1 uncharacterized protein LOC111024503 [Momordica charantia]5.0e-3063.55Show/hide
Query:  KAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASD
        KAQS+  P  P  +I R+EFDL+K +FD QVEALK KC+KKE +FDD    +SPFT ++L+ PIP KFK PTMK YD   +PKDYVEVFEGLMDF++A+D
Subjt:  KAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASD

Query:  AIKCRAF
        AIKC AF
Subjt:  AIKCRAF

TrEMBL top hitse value%identityAlignment
A0A6J1DDW5 uncharacterized protein LOC1110196342.0e-3264.6Show/hide
Query:  HNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMD
        H   N +A+S   P  P G+I R+EFD LKSKFD QVEALK KC+KKES+FDD    +SPFT ++L+A IP KFK PTMK YDG  +PKDYVEVFEGLMD
Subjt:  HNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMD

Query:  FKSASDAIKCRAF
        F++A+DAIKCR F
Subjt:  FKSASDAIKCRAF

A0A6J1DM55 uncharacterized protein LOC1110222672.4e-3061.95Show/hide
Query:  HNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMD
        H   N +A+S   P  P  +I R+EFD LKSKFD QVEALK  C+KKES+FDD    + PFT ++L+API  KFK PTMK YDG  NPKDYV+VFEGLM+
Subjt:  HNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMD

Query:  FKSASDAIKCRAF
        F++A+DAIKCRAF
Subjt:  FKSASDAIKCRAF

A0A6J1DPC9 uncharacterized protein LOC1110222806.4e-3153.19Show/hide
Query:  DENCNYHSASEGHTSKFEGIDSHGGDDLHNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPN
        D +   H   +   + +E  DS       +  N KAQS+  P  P  +I R+EFDL+K +FD QVEALK +C+KKES FDD    +SPFT ++++APIP 
Subjt:  DENCNYHSASEGHTSKFEGIDSHGGDDLHNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPN

Query:  KFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF
        KFK PTMK YDG  +PKDYVEVFEGLMDF++A+DAIKC AF
Subjt:  KFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF

A0A6J1DPN4 uncharacterized protein LOC1110230601.2e-3448.4Show/hide
Query:  RMRTMEESYNNMLNTTRLDSTAPHPLYPDEENECLDLEDARNEDENCNYHSASEGHTSKFEGIDSHGGDDL----HNKLNDKAQSRLVPSKPHGLIIRKE
        +MRTMEE YN M+      S +   +  ++ +E  DL     ++E+         H ++     SH G+      H   N +A+S   P  P G+I R+E
Subjt:  RMRTMEESYNNMLNTTRLDSTAPHPLYPDEENECLDLEDARNEDENCNYHSASEGHTSKFEGIDSHGGDDL----HNKLNDKAQSRLVPSKPHGLIIRKE

Query:  FDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF
        F+ LKSKFD QVEALK++C+KKESAFDD    +SPFT ++L+A IP KFK PTMK YDG  +PKDYVEVFEGLMDF++A+DAIKCRAF
Subjt:  FDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF

A0A6J1DVR0 uncharacterized protein LOC1110245032.4e-3063.55Show/hide
Query:  KAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASD
        KAQS+  P  P  +I R+EFDL+K +FD QVEALK KC+KKE +FDD    +SPFT ++L+ PIP KFK PTMK YD   +PKDYVEVFEGLMDF++A+D
Subjt:  KAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKPPTMKHYDGPTNPKDYVEVFEGLMDFKSASD

Query:  AIKCRAF
        AIKC AF
Subjt:  AIKCRAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTGCAGAAACAATTGGCGTCGTCTGTGGAAGGACGTCTTAAGTCATTCCTACCAAAAGCTGCTATGGCACCTACTATTTCAACTGACTCAATCCACCTGAGCCG
CCAGGTTAACAATGGAGTCTCAAATCAGGAAGGAACCTCTAAGGTGGCAGAAGATAGAGTTCAGGGTGGGCGAAATCTTACCCGACAGGCCGATCCTAATGTATTTGCTC
GTATGCGTACCATGGAAGAGTCCTACAACAACATGCTCAATACAACAAGGTTAGATTCGACTGCTCCTCACCCGCTGTATCCGGATGAAGAGAATGAGTGTCTCGACCTA
GAGGATGCACGAAATGAAGACGAAAACTGCAATTATCATTCGGCTAGTGAAGGTCACACCTCCAAGTTCGAGGGTATAGACAGTCATGGGGGCGATGACCTGCACAACAA
ACTGAATGACAAAGCTCAATCTCGTCTCGTTCCCTCAAAGCCACATGGTTTGATAATTCGCAAGGAATTCGATCTCCTGAAGAGCAAGTTCGACACCCAAGTTGAAGCTT
TGAAGCTCAAGTGCAAGAAGAAAGAGAGTGCATTCGATGATAGCGGGCCAAGCAAATCGCCATTCACCCAGGAGGTTTTGGATGCCCCAATCCCAAACAAGTTCAAGCCT
CCGACTATGAAGCATTATGATGGGCCGACCAACCCAAAGGATTATGTCGAGGTATTTGAAGGTCTTATGGACTTCAAGTCGGCATCTGATGCTATTAAATGTCGAGCATT
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTGCAGAAACAATTGGCGTCGTCTGTGGAAGGACGTCTTAAGTCATTCCTACCAAAAGCTGCTATGGCACCTACTATTTCAACTGACTCAATCCACCTGAGCCG
CCAGGTTAACAATGGAGTCTCAAATCAGGAAGGAACCTCTAAGGTGGCAGAAGATAGAGTTCAGGGTGGGCGAAATCTTACCCGACAGGCCGATCCTAATGTATTTGCTC
GTATGCGTACCATGGAAGAGTCCTACAACAACATGCTCAATACAACAAGGTTAGATTCGACTGCTCCTCACCCGCTGTATCCGGATGAAGAGAATGAGTGTCTCGACCTA
GAGGATGCACGAAATGAAGACGAAAACTGCAATTATCATTCGGCTAGTGAAGGTCACACCTCCAAGTTCGAGGGTATAGACAGTCATGGGGGCGATGACCTGCACAACAA
ACTGAATGACAAAGCTCAATCTCGTCTCGTTCCCTCAAAGCCACATGGTTTGATAATTCGCAAGGAATTCGATCTCCTGAAGAGCAAGTTCGACACCCAAGTTGAAGCTT
TGAAGCTCAAGTGCAAGAAGAAAGAGAGTGCATTCGATGATAGCGGGCCAAGCAAATCGCCATTCACCCAGGAGGTTTTGGATGCCCCAATCCCAAACAAGTTCAAGCCT
CCGACTATGAAGCATTATGATGGGCCGACCAACCCAAAGGATTATGTCGAGGTATTTGAAGGTCTTATGGACTTCAAGTCGGCATCTGATGCTATTAAATGTCGAGCATT
CTAG
Protein sequenceShow/hide protein sequence
MLVQKQLASSVEGRLKSFLPKAAMAPTISTDSIHLSRQVNNGVSNQEGTSKVAEDRVQGGRNLTRQADPNVFARMRTMEESYNNMLNTTRLDSTAPHPLYPDEENECLDL
EDARNEDENCNYHSASEGHTSKFEGIDSHGGDDLHNKLNDKAQSRLVPSKPHGLIIRKEFDLLKSKFDTQVEALKLKCKKKESAFDDSGPSKSPFTQEVLDAPIPNKFKP
PTMKHYDGPTNPKDYVEVFEGLMDFKSASDAIKCRAF