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Moc05g25280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g25280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:17942409..17948232
RNA-Seq ExpressionMoc05g25280
SyntenyMoc05g25280
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144034.1 uncharacterized protein LOC111013826 [Momordica charantia]3.0e-5053.16Show/hide
Query:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK
        ++ +LL VDQL ACF+ KRI++KPGR+Y+CARKGAGGI+KGPTSIK  V KWF+ASG WL+++ES   FF+VP RFGNLV I+ +P+L++ +F+ LK++K
Subjt:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK

Query:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRK---RPHAGQASKNKEAPSHAIIDPPIEVEVVEVEL
         RF   +++ TL+TD+LLL S LL+YNP + P E  RPNS LAMVC F+  V+RK   R HA +A+++ + P+ A++ P  E     +EL
Subjt:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRK---RPHAGQASKNKEAPSHAIIDPPIEVEVVEVEL

XP_022152115.1 uncharacterized protein LOC111019905 [Momordica charantia]3.7e-4064.93Show/hide
Query:  LCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNP
        +C RKGAGGI+KGPTSIK  VGKWFFASG WL+++ES  PFF++P RFGNLV IK IP+L + TF+ LKF+K  F   ++I TL+TDKLLL S LL+YNP
Subjt:  LCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNP

Query:  LLAPSEARRPNSELAMVCGFSQDVRRK---RPHA
        L+ P EA RPNSELAMVCGF+  V+RK   R HA
Subjt:  LLAPSEARRPNSELAMVCGFSQDVRRK---RPHA

XP_022158122.1 uncharacterized protein LOC111024680 [Momordica charantia]4.7e-4359.15Show/hide
Query:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK
        ++ +LL VDQL ACF+ KRI++KPGR+Y+CARKGAGGI+KGPTSIK  V KWF+ASG WL+++ES   FF+VP RFGNLV I+ +P+L++ +F+ LK++K
Subjt:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK

Query:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSEL
         RF   +++ TL+TD+LLL S LL+YNP + P E+ RPNSEL
Subjt:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSEL

XP_022158650.1 uncharacterized protein LOC111025108 [Momordica charantia]1.0e-4258.33Show/hide
Query:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK
        ++ +LL VDQL ACF+ KRI++KPGR+Y+CARKGA GI+KGPTSIK  V KWF+ASG WL+++ES   FF+VP RFGNLV I+ +P+L++ +F+ LK++K
Subjt:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK

Query:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAM
          F   +++ TL+TDKLLL S LL+YNP + P E+ RPNSEL M
Subjt:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAM

XP_022159063.1 uncharacterized protein LOC111025502, partial [Momordica charantia]1.3e-7448.05Show/hide
Query:  SSSKKTDSVKEFASRLDSELEEIENFRFSEDDRDDSDTSTSGQGLEYPSQMPENYLGPLRRRYNIPDDILLRLPKEGERADNPPEGEV------------
        SSS  ++   + A RL+S+LEEIEN R S DD +DSD STSGQGLEYPS++PE+YLG LRR + IP++ILLRLP+EGERADNPPEG V            
Subjt:  SSSKKTDSVKEFASRLDSELEEIENFRFSEDDRDDSDTSTSGQGLEYPSQMPENYLGPLRRRYNIPDDILLRLPKEGERADNPPEGEV------------

Query:  -------------------------------------------DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASG
                                                   ++ +L  VDQL ACF+ KRI++KPGR+Y+CARKGAGGI+KGPTSIK  V KWF+ASG
Subjt:  -------------------------------------------DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASG

Query:  SWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRK--
         WL+++ES   FF+VP RFGNLV I+ +P+L++ +F+ LK++K RF   +++ TL+TD+LLL S LL+YNP + P E+ RPNSELAMVCGF+  V+RK  
Subjt:  SWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRK--

Query:  -RPHAGQASKNKEAPSHAIIDPPIEVEVVEVEL
         R HA +A+++ +  + A++ P  E   + +EL
Subjt:  -RPHAGQASKNKEAPSHAIIDPPIEVEVVEVEL

TrEMBL top hitse value%identityAlignment
A0A6J1CR42 uncharacterized protein LOC1110138261.5e-5053.16Show/hide
Query:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK
        ++ +LL VDQL ACF+ KRI++KPGR+Y+CARKGAGGI+KGPTSIK  V KWF+ASG WL+++ES   FF+VP RFGNLV I+ +P+L++ +F+ LK++K
Subjt:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK

Query:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRK---RPHAGQASKNKEAPSHAIIDPPIEVEVVEVEL
         RF   +++ TL+TD+LLL S LL+YNP + P E  RPNS LAMVC F+  V+RK   R HA +A+++ + P+ A++ P  E     +EL
Subjt:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRK---RPHAGQASKNKEAPSHAIIDPPIEVEVVEVEL

A0A6J1DD09 uncharacterized protein LOC1110199051.8e-4064.93Show/hide
Query:  LCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNP
        +C RKGAGGI+KGPTSIK  VGKWFFASG WL+++ES  PFF++P RFGNLV IK IP+L + TF+ LKF+K  F   ++I TL+TDKLLL S LL+YNP
Subjt:  LCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNP

Query:  LLAPSEARRPNSELAMVCGFSQDVRRK---RPHA
        L+ P EA RPNSELAMVCGF+  V+RK   R HA
Subjt:  LLAPSEARRPNSELAMVCGFSQDVRRK---RPHA

A0A6J1DWD2 uncharacterized protein LOC1110246802.3e-4359.15Show/hide
Query:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK
        ++ +LL VDQL ACF+ KRI++KPGR+Y+CARKGAGGI+KGPTSIK  V KWF+ASG WL+++ES   FF+VP RFGNLV I+ +P+L++ +F+ LK++K
Subjt:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK

Query:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSEL
         RF   +++ TL+TD+LLL S LL+YNP + P E+ RPNSEL
Subjt:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSEL

A0A6J1DWF1 uncharacterized protein LOC1110251085.0e-4358.33Show/hide
Query:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK
        ++ +LL VDQL ACF+ KRI++KPGR+Y+CARKGA GI+KGPTSIK  V KWF+ASG WL+++ES   FF+VP RFGNLV I+ +P+L++ +F+ LK++K
Subjt:  DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFK

Query:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAM
          F   +++ TL+TDKLLL S LL+YNP + P E+ RPNSEL M
Subjt:  GRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAM

A0A6J1DXS5 uncharacterized protein LOC1110255026.5e-7548.05Show/hide
Query:  SSSKKTDSVKEFASRLDSELEEIENFRFSEDDRDDSDTSTSGQGLEYPSQMPENYLGPLRRRYNIPDDILLRLPKEGERADNPPEGEV------------
        SSS  ++   + A RL+S+LEEIEN R S DD +DSD STSGQGLEYPS++PE+YLG LRR + IP++ILLRLP+EGERADNPPEG V            
Subjt:  SSSKKTDSVKEFASRLDSELEEIENFRFSEDDRDDSDTSTSGQGLEYPSQMPENYLGPLRRRYNIPDDILLRLPKEGERADNPPEGEV------------

Query:  -------------------------------------------DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASG
                                                   ++ +L  VDQL ACF+ KRI++KPGR+Y+CARKGAGGI+KGPTSIK  V KWF+ASG
Subjt:  -------------------------------------------DDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASG

Query:  SWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRK--
         WL+++ES   FF+VP RFGNLV I+ +P+L++ +F+ LK++K RF   +++ TL+TD+LLL S LL+YNP + P E+ RPNSELAMVCGF+  V+RK  
Subjt:  SWLSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRK--

Query:  -RPHAGQASKNKEAPSHAIIDPPIEVEVVEVEL
         R HA +A+++ +  + A++ P  E   + +EL
Subjt:  -RPHAGQASKNKEAPSHAIIDPPIEVEVVEVEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTTGAGGGTGGCAACATCCCCCCATTAGAGAGCGGATCGGTGAAAGTTGAGAACGTGACTGCTGGGAGCGGATTTGGGCCACTAGCTCATATTGTAGAGAAATT
GCACAACGTCAATCTAGCTCGAACCCGATCCTTGCTCCGACTCGAAACGCTAAGGGAAGACCTGCACAAGAGGACAAAATCTCCAACGCTCAAGTCAGTAAGCAGCTCAG
ACTCAATATTAAGTTCGAGAAGAAATTCAATACCTGATGGTGAAATGAGGCCCTTCATTTATAGGTTTAGGTTTCGACAGGGGTTGCGGCAGGCGGTTCGATCTCGATCT
ATCAGAGAAGTTTACTATCTTTGGGGGAAACCAATCCACGTGTTGACTTCCGACGCCGTCATGATAATTATTGCCGTTGGAAACCTTGAAAACGGAATCGTCATTCGGCG
TGCACTCAAGTACCCCTGTCGTTCGGACTTCTTCCGATCTGGATCGTCCAATTTTAGACACGTTTCATCTAGTAGTAGTACATCGAGTAGTGCAACTCGGAGTCGGGATT
CTTCCTCTAAGAAGACTGATTCTGTAAAGGAATTTGCGAGTAGGCTAGACTCCGAATTGGAGGAGATAGAAAACTTTAGGTTCTCCGAAGACGATAGAGATGATAGTGAT
ACCTCGACTTCAGGTCAAGGTTTAGAATATCCTTCCCAAATGCCTGAGAACTACCTCGGCCCTCTTCGTAGGAGGTATAATATACCAGATGACATCCTTCTTAGGCTTCC
CAAGGAAGGGGAACGAGCTGATAATCCGCCTGAAGGGGAAGTGGACGATCTGGACCTCCTCGGAGTCGACCAGCTTTTTGCTTGCTTCAAGGTCAAGCGAATTTCTAGGA
AGCCAGGGAGGTATTACCTGTGTGCTAGGAAGGGTGCAGGAGGCATTCTAAAGGGTCCAACCTCCATAAAGAAGTTGGTTGGAAAGTGGTTCTTCGCCTCTGGCTCGTGG
TTGTCCAGGAACGAGTCTGACCTGCCTTTCTTCAACGTCCCTTATAGGTTTGGGAACTTAGTCGTTATAAAGCTAATCCCTCAACTTTCCGAGCCGACCTTCAACGCTCT
AAAATTTTTCAAAGGCAGATTCAAGAGTTGTAAGCAGATCAACACGCTTATCACGGACAAGCTTCTTCTTATCTCCAGACTGCTCAATTACAATCCTCTCCTAGCCCCAT
CCGAAGCTCGGAGACCGAACTCTGAACTAGCCATGGTGTGCGGTTTTTCCCAAGATGTTAGGCGCAAGCGCCCTCACGCTGGGCAGGCTTCCAAGAATAAGGAGGCACCA
AGTCATGCTATCATTGACCCTCCCATCGAAGTCGAGGTGGTTGAGGTCGAACTGTTGGTGGAAGTAGGTCTACCAACCTTCAGAGTGGAGCATTTTGATCAGCAAGCCAA
CGATGATGCGCTCTTGCTCAACCTCGACCTTTTTGAGGAGAGGCGCACCCAGTCACAGCTTCGCCGAGCCGAGTATCAGAACCGCATGGCGCGATATTACAATGCAAGGG
TGAAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTTGAGGGTGGCAACATCCCCCCATTAGAGAGCGGATCGGTGAAAGTTGAGAACGTGACTGCTGGGAGCGGATTTGGGCCACTAGCTCATATTGTAGAGAAATT
GCACAACGTCAATCTAGCTCGAACCCGATCCTTGCTCCGACTCGAAACGCTAAGGGAAGACCTGCACAAGAGGACAAAATCTCCAACGCTCAAGTCAGTAAGCAGCTCAG
ACTCAATATTAAGTTCGAGAAGAAATTCAATACCTGATGGTGAAATGAGGCCCTTCATTTATAGGTTTAGGTTTCGACAGGGGTTGCGGCAGGCGGTTCGATCTCGATCT
ATCAGAGAAGTTTACTATCTTTGGGGGAAACCAATCCACGTGTTGACTTCCGACGCCGTCATGATAATTATTGCCGTTGGAAACCTTGAAAACGGAATCGTCATTCGGCG
TGCACTCAAGTACCCCTGTCGTTCGGACTTCTTCCGATCTGGATCGTCCAATTTTAGACACGTTTCATCTAGTAGTAGTACATCGAGTAGTGCAACTCGGAGTCGGGATT
CTTCCTCTAAGAAGACTGATTCTGTAAAGGAATTTGCGAGTAGGCTAGACTCCGAATTGGAGGAGATAGAAAACTTTAGGTTCTCCGAAGACGATAGAGATGATAGTGAT
ACCTCGACTTCAGGTCAAGGTTTAGAATATCCTTCCCAAATGCCTGAGAACTACCTCGGCCCTCTTCGTAGGAGGTATAATATACCAGATGACATCCTTCTTAGGCTTCC
CAAGGAAGGGGAACGAGCTGATAATCCGCCTGAAGGGGAAGTGGACGATCTGGACCTCCTCGGAGTCGACCAGCTTTTTGCTTGCTTCAAGGTCAAGCGAATTTCTAGGA
AGCCAGGGAGGTATTACCTGTGTGCTAGGAAGGGTGCAGGAGGCATTCTAAAGGGTCCAACCTCCATAAAGAAGTTGGTTGGAAAGTGGTTCTTCGCCTCTGGCTCGTGG
TTGTCCAGGAACGAGTCTGACCTGCCTTTCTTCAACGTCCCTTATAGGTTTGGGAACTTAGTCGTTATAAAGCTAATCCCTCAACTTTCCGAGCCGACCTTCAACGCTCT
AAAATTTTTCAAAGGCAGATTCAAGAGTTGTAAGCAGATCAACACGCTTATCACGGACAAGCTTCTTCTTATCTCCAGACTGCTCAATTACAATCCTCTCCTAGCCCCAT
CCGAAGCTCGGAGACCGAACTCTGAACTAGCCATGGTGTGCGGTTTTTCCCAAGATGTTAGGCGCAAGCGCCCTCACGCTGGGCAGGCTTCCAAGAATAAGGAGGCACCA
AGTCATGCTATCATTGACCCTCCCATCGAAGTCGAGGTGGTTGAGGTCGAACTGTTGGTGGAAGTAGGTCTACCAACCTTCAGAGTGGAGCATTTTGATCAGCAAGCCAA
CGATGATGCGCTCTTGCTCAACCTCGACCTTTTTGAGGAGAGGCGCACCCAGTCACAGCTTCGCCGAGCCGAGTATCAGAACCGCATGGCGCGATATTACAATGCAAGGG
TGAAGCCTTGA
Protein sequenceShow/hide protein sequence
MDVEGGNIPPLESGSVKVENVTAGSGFGPLAHIVEKLHNVNLARTRSLLRLETLREDLHKRTKSPTLKSVSSSDSILSSRRNSIPDGEMRPFIYRFRFRQGLRQAVRSRS
IREVYYLWGKPIHVLTSDAVMIIIAVGNLENGIVIRRALKYPCRSDFFRSGSSNFRHVSSSSSTSSSATRSRDSSSKKTDSVKEFASRLDSELEEIENFRFSEDDRDDSD
TSTSGQGLEYPSQMPENYLGPLRRRYNIPDDILLRLPKEGERADNPPEGEVDDLDLLGVDQLFACFKVKRISRKPGRYYLCARKGAGGILKGPTSIKKLVGKWFFASGSW
LSRNESDLPFFNVPYRFGNLVVIKLIPQLSEPTFNALKFFKGRFKSCKQINTLITDKLLLISRLLNYNPLLAPSEARRPNSELAMVCGFSQDVRRKRPHAGQASKNKEAP
SHAIIDPPIEVEVVEVELLVEVGLPTFRVEHFDQQANDDALLLNLDLFEERRTQSQLRRAEYQNRMARYYNARVKP