CuGenDBv2

Gene ID	Moc05g25430
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr5:18040564..18041391
RNA-Seq Expression	Moc05g25430
Synteny	Moc05g25430
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.0e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

A0A5A7TU93 Gag/pol protein

1.0e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

A0A5A7TWB9 Gag/pol protein

1.0e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

A0A5A7TZD7 Gag/pol protein

1.0e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

A0A5A7V4M1 Gag/pol protein

1.0e-67

58.33

Show/hide

Query:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ
        V   Y+ W KAN+KA+ YILA++S+VLAKK+E+M+TA+EIMDSLQ +    S                                            E SQ
Subjt:  VHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPS--------------------------------------------EQSQ

Query:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK
         SFI+E LP+SFLQFRSNAV NK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS ++FHRG TSGTKS PSSS +K +KKKK  G+  K + AA  T 
Subjt:  ASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEANVTTS-KRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATK

Query:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS
        K KAK A K  CFH N + HWK NCPKYLAEKKK  +GKYDLLVLE CLVENDDSAWI+DS ATNHVCSSFQGISS
Subjt:  KGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRATNHVCSSFQGISS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAGTGCACAACATCTATGACTGGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAACATATCTGATGTGCTTGCGAAGAAGTATGAGAACATGGT
CACTGCCAAGGAGATCATGGACTCACTACAGAGCATACGAACATGGCCGTCAGAGCAGAGTCAAGCCAGCTTCATTATGGAATATCTTCCGAAGAGTTTCCTGCAATTCC
GCAGCAATGCGGTTACGAATAAGTTGGAGTACACTCTTACCACGCTTTTAAACGAGCTACAGACCTACCAGTCACTTATGAAAAATAAGGGACAGGAGGGGGAGGCAAAT
GTTACCACCTCCAAAAGGTTTCATCGAGGTTGGACCTCTGGAACTAAGTCTGCGCCGTCTTCTTCTAGAAGTAAGACTTTCAAGAAGAAGAAAGCTGTTGGTAAGGTGCC
GAAACCTGATTCCGCTGCTACCGCGACCAAGAAAGGCAAGGCCAAGATTGCAGACAAGGAGAAATGTTTCCACTACAACATGGACAGGCATTGGAAGCCCAATTGCCCAA
AATACCTGGCCGAGAAGAAGAAAGTCAACGAAGGTAAATACGATTTACTTGTTTTGGAAATATGTTTAGTGGAGAACGATGACTCTGCCTGGATATTAGATTCAAGAGCC
ACTAATCATGTTTGTTCTTCGTTTCAGGGAATTAGTTCCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAVHNIYDWWIKANDKAKVYILANISDVLAKKYENMVTAKEIMDSLQSIRTWPSEQSQASFIMEYLPKSFLQFRSNAVTNKLEYTLTTLLNELQTYQSLMKNKGQEGEAN
VTTSKRFHRGWTSGTKSAPSSSRSKTFKKKKAVGKVPKPDSAATATKKGKAKIADKEKCFHYNMDRHWKPNCPKYLAEKKKVNEGKYDLLVLEICLVENDDSAWILDSRA
TNHVCSSFQGISS

Moc05g25430 (gene) of Bitter gourd (OHB3-1) v2 genome