; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc05g25530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g25530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:18093965..18094753
RNA-Seq ExpressionMoc05g25530
SyntenyMoc05g25530
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.3e-7476.56Show/hide
Query:  MPQYTTYNPLYDVPVGQYPHPFVKGAQQIPTNIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------
        MPQYTTYNPLYDVPVGQY HPFVKGAQQIPTNIIFREPEQMMSPPTVLNLG   AKTDPVGQNAP                                   
Subjt:  MPQYTTYNPLYDVPVGQYPHPFVKGAQQIPTNIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------

Query:  IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
        +IPPK KVPEFEKY+GSSCPKNHL MYCRKMAAYVQNDKLLIH FQDSLSGPASR YMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
Subjt:  IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL

XP_022149382.1 uncharacterized protein LOC111017812 [Momordica charantia]2.5e-6567.65Show/hide
Query:  MEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPT
        M+DQKAEQEK RKDIEELREKLDVI LALEKGK  ADP TSSN +H+ QE PPYP GY PPLR VAEGFM Q TTYNPLYD+ VGQYP PFVKG QQIPT
Subjt:  MEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPT

Query:  NIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM
        NIIFREPEQMM PPTVLNLGG   KTDPVGQ+ P                                   +I  KFKVPEFEKYDGSSCPKNHLIMYC+ M
Subjt:  NIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM

Query:  AAYV
        AAYV
Subjt:  AAYV

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]5.9e-8362.45Show/hide
Query:  MMEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGY-------GPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFV
        M +D+K+EQEKTRKDIEELREKLD I LALEKGK  A+   +SN IHEP  TP +PPG+       GP  RP+ EGFM QYTTYNPLYD+P GQ+P P V
Subjt:  MMEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGY-------GPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFV

Query:  KGAQQIPTNIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNH
        +G  Q P  IIF+EPEQ+++PPTVLNLGG  A  DP  Q AP                                   +IPPKFK+PEFEKY+GSSCPKNH
Subjt:  KGAQQIPTNIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNH

Query:  LIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
        LIMYCRKMAAY+QNDKLLIH FQDSLSGP S  YM LDS HV SWKNLADSFLKQYKHNIDM  DRLDL
Subjt:  LIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]2.5e-11080.08Show/hide
Query:  MEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPT
        MEDQKAEQEKTRKDIEELREKLD I L LEKGKATADPATSSN IHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVP+GQYPH FVKGAQQIPT
Subjt:  MEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPT

Query:  NIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM
        NIIFREPEQMMSPPTV NLGG PAKTDPV QNA                                    +IPPKFKVPEFEKYDGSSCPKNHLIMYCRKM
Subjt:  NIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM

Query:  AAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
         AYVQN KLLIH FQDSL G ASR YMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
Subjt:  AAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.2e-5173.03Show/hide
Query:  MMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKL
        MMSPPTVLNLGG PAKTD VGQNAP                                   +IPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKL
Subjt:  MMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKL

Query:  LIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
        LIH FQDSLSGPASR YMQLDSS+VGSWKNLADSFLKQYKHNIDMAPDRLDL
Subjt:  LIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL

TrEMBL top hitse value%identityAlignment
A0A6J1D099 Ribonuclease H6.4e-7576.56Show/hide
Query:  MPQYTTYNPLYDVPVGQYPHPFVKGAQQIPTNIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------
        MPQYTTYNPLYDVPVGQY HPFVKGAQQIPTNIIFREPEQMMSPPTVLNLG   AKTDPVGQNAP                                   
Subjt:  MPQYTTYNPLYDVPVGQYPHPFVKGAQQIPTNIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------

Query:  IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
        +IPPK KVPEFEKY+GSSCPKNHL MYCRKMAAYVQNDKLLIH FQDSLSGPASR YMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
Subjt:  IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL

A0A6J1D7T3 uncharacterized protein LOC1110178121.2e-6567.65Show/hide
Query:  MEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPT
        M+DQKAEQEK RKDIEELREKLDVI LALEKGK  ADP TSSN +H+ QE PPYP GY PPLR VAEGFM Q TTYNPLYD+ VGQYP PFVKG QQIPT
Subjt:  MEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPT

Query:  NIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM
        NIIFREPEQMM PPTVLNLGG   KTDPVGQ+ P                                   +I  KFKVPEFEKYDGSSCPKNHLIMYC+ M
Subjt:  NIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM

Query:  AAYV
        AAYV
Subjt:  AAYV

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.7e-8362.83Show/hide
Query:  MMEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGY-------GPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFV
        M +D+K+EQEKTRKDIEELREKLD I LALEKGK  A+   +SN IHEP  TP +PPG+       GP  RP+ EGFM QYTTYNPLYD+P GQ+P P V
Subjt:  MMEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGY-------GPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFV

Query:  KGAQQIPTNIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNH
        +G  Q P  IIF+EPEQ+++PPTVLNLGG  A  DP  Q AP                                   +IPPKFK+PEFEKYDGSSCPKNH
Subjt:  KGAQQIPTNIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNH

Query:  LIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
        LIMYCRKMAAY+QNDKLLIH FQDSLSGP S  YM LDS HV SWKNLADSFLKQYKHNIDM  DRLDL
Subjt:  LIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL

A0A6J1DZ90 Ribonuclease H1.2e-11080.08Show/hide
Query:  MEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPT
        MEDQKAEQEKTRKDIEELREKLD I L LEKGKATADPATSSN IHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVP+GQYPH FVKGAQQIPT
Subjt:  MEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPT

Query:  NIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM
        NIIFREPEQMMSPPTV NLGG PAKTDPV QNA                                    +IPPKFKVPEFEKYDGSSCPKNHLIMYCRKM
Subjt:  NIIFREPEQMMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM

Query:  AAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
         AYVQN KLLIH FQDSL G ASR YMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
Subjt:  AAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL

A0A6J1E2J7 Ribonuclease H5.8e-5273.03Show/hide
Query:  MMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKL
        MMSPPTVLNLGG PAKTD VGQNAP                                   +IPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKL
Subjt:  MMSPPTVLNLGGRPAKTDPVGQNAP-----------------------------------IIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKL

Query:  LIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL
        LIH FQDSLSGPASR YMQLDSS+VGSWKNLADSFLKQYKHNIDMAPDRLDL
Subjt:  LIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSFLKQYKHNIDMAPDRLDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAGATCAAAAAGCCGAGCAGGAGAAAACAAGGAAAGATATTGAGGAGTTGCGAGAAAAGCTAGATGTCATCTTCCTCGCGTTGGAAAAAGGCAAAGCG
ACTGCAGATCCTGCTACATCTAGCAACTCTATCCATGAGCCGCAAGAAACCCCGCCTTATCCACCTGGGTACGGTCCACCTCTTAGGCCAGTGGCAGAGGGTTTC
ATGCCACAATATACAACGTACAACCCTCTGTATGACGTTCCGGTTGGTCAGTATCCGCATCCTTTTGTTAAGGGAGCTCAGCAAATCCCAACCAATATCATTTTT
CGAGAGCCCGAGCAAATGATGTCACCCCCTACAGTCCTTAACCTAGGTGGTCGCCCAGCCAAGACAGACCCAGTCGGACAAAATGCCCCCATCATCCCTCCAAAA
TTCAAGGTGCCAGAGTTTGAGAAGTACGATGGTTCTTCTTGTCCTAAGAATCATCTTATAATGTACTGTAGGAAGATGGCAGCGTACGTCCAAAATGACAAATTG
TTGATACACTACTTTCAAGATAGTTTATCTGGTCCGGCCTCTCGTTCTTACATGCAGTTAGATAGCTCTCATGTGGGCTCGTGGAAGAATCTGGCCGACTCCTTC
CTAAAACAATATAAGCATAACATAGACATGGCTCCAGATCGCTTAGATTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGAAGATCAAAAAGCCGAGCAGGAGAAAACAAGGAAAGATATTGAGGAGTTGCGAGAAAAGCTAGATGTCATCTTCCTCGCGTTGGAAAAAGGCAAAGCG
ACTGCAGATCCTGCTACATCTAGCAACTCTATCCATGAGCCGCAAGAAACCCCGCCTTATCCACCTGGGTACGGTCCACCTCTTAGGCCAGTGGCAGAGGGTTTC
ATGCCACAATATACAACGTACAACCCTCTGTATGACGTTCCGGTTGGTCAGTATCCGCATCCTTTTGTTAAGGGAGCTCAGCAAATCCCAACCAATATCATTTTT
CGAGAGCCCGAGCAAATGATGTCACCCCCTACAGTCCTTAACCTAGGTGGTCGCCCAGCCAAGACAGACCCAGTCGGACAAAATGCCCCCATCATCCCTCCAAAA
TTCAAGGTGCCAGAGTTTGAGAAGTACGATGGTTCTTCTTGTCCTAAGAATCATCTTATAATGTACTGTAGGAAGATGGCAGCGTACGTCCAAAATGACAAATTG
TTGATACACTACTTTCAAGATAGTTTATCTGGTCCGGCCTCTCGTTCTTACATGCAGTTAGATAGCTCTCATGTGGGCTCGTGGAAGAATCTGGCCGACTCCTTC
CTAAAACAATATAAGCATAACATAGACATGGCTCCAGATCGCTTAGATTTATAG
Protein sequenceShow/hide protein sequence
MMEDQKAEQEKTRKDIEELREKLDVIFLALEKGKATADPATSSNSIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNPLYDVPVGQYPHPFVKGAQQIPTNIIF
REPEQMMSPPTVLNLGGRPAKTDPVGQNAPIIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHYFQDSLSGPASRSYMQLDSSHVGSWKNLADSF
LKQYKHNIDMAPDRLDL