; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc05g25780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g25780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr5:18297835..18298377
RNA-Seq ExpressionMoc05g25780
SyntenyMoc05g25780
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152309.1 uncharacterized protein LOC111020057 [Momordica charantia]2.2e-2545.56Show/hide
Query:  REYAQVDRNLGDIKLKLK---------------------ILC----EEKK--------------------------------------ELLRRRVLPRYF
        RE AQVDRNLG IKLK++                      +C    EEKK                                      E L+ R +P++F
Subjt:  REYAQVDRNLGDIKLKLK---------------------ILC----EEKK--------------------------------------ELLRRRVLPRYF

Query:  QKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ
        ++D AQKLQ LRQG+KSVEDYYKE+D LMDR DL+ED++ LM    ND+NKEIADKVDLQPYF+I+EMLH+AIKIE+Q+Q
Subjt:  QKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]7.9e-3181.05Show/hide
Query:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ
        E KELLRRR +PR+F +DTAQKLQVLRQGSKSVEDYYKEMD LM+R DLEED+ENLM    N +NKEIADKVDLQPYFNI+EMLH+AIKIEKQLQ
Subjt:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

XP_022158803.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]5.1e-3080Show/hide
Query:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ
        E KELLRRR +PR+F + TAQKLQVLRQGSKSVEDYYKEMD LM+R DLEED+ENLM    N +NKEIADKVDLQPYFNI+EMLH+AIKIEKQLQ
Subjt:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]6.5e-2557.38Show/hide
Query:  REYAQV--DRNLGDIKLKLKILCE---EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVD
        ++YAQ+  D+ +   +  L+   +   E KE +R+R +P+YFQ+D AQKLQ L+QG KSVEDYYKEMD LMDR DL+ED+E LM    N +N EIADK D
Subjt:  REYAQV--DRNLGDIKLKLKILCE---EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVD

Query:  LQPYFNIKEMLHIAIKIEKQLQ
        LQPY NI+E+LHIAIKIE+Q+Q
Subjt:  LQPYFNIKEMLHIAIKIEKQLQ

XP_023553652.1 uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]6.5e-2557.38Show/hide
Query:  REYAQV--DRNLGDIKLKLKILCE---EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVD
        ++YAQ+  D+ +   +  L+   +   E KE +R+R +P+YFQ+D AQKLQ L+QG KSVEDYYKEMD LMDR DL+ED+E LM    N +N EIADK D
Subjt:  REYAQV--DRNLGDIKLKLKILCE---EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVD

Query:  LQPYFNIKEMLHIAIKIEKQLQ
        LQPY NI+E+LHIAIKIE+Q+Q
Subjt:  LQPYFNIKEMLHIAIKIEKQLQ

TrEMBL top hitse value%identityAlignment
A0A6J1DFN2 uncharacterized protein LOC1110200571.1e-2545.56Show/hide
Query:  REYAQVDRNLGDIKLKLK---------------------ILC----EEKK--------------------------------------ELLRRRVLPRYF
        RE AQVDRNLG IKLK++                      +C    EEKK                                      E L+ R +P++F
Subjt:  REYAQVDRNLGDIKLKLK---------------------ILC----EEKK--------------------------------------ELLRRRVLPRYF

Query:  QKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ
        ++D AQKLQ LRQG+KSVEDYYKE+D LMDR DL+ED++ LM    ND+NKEIADKVDLQPYF+I+EMLH+AIKIE+Q+Q
Subjt:  QKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241153.8e-3181.05Show/hide
Query:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ
        E KELLRRR +PR+F +DTAQKLQVLRQGSKSVEDYYKEMD LM+R DLEED+ENLM    N +NKEIADKVDLQPYFNI+EMLH+AIKIEKQLQ
Subjt:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

A0A6J1DX46 LOW QUALITY PROTEIN: uncharacterized protein LOC1110252682.5e-3080Show/hide
Query:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ
        E KELLRRR +PR+F + TAQKLQVLRQGSKSVEDYYKEMD LM+R DLEED+ENLM    N +NKEIADKVDLQPYFNI+EMLH+AIKIEKQLQ
Subjt:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

A0A6J1EQJ1 uncharacterized protein LOC1114365302.7e-2467.37Show/hide
Query:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ
        E KE +R+R +P+YFQ+D AQKLQ L+QG KSVEDYYKEMD LMDR +L+ED+E LM    N +N EIADK DLQPY NI+E+LHIAIKIE+Q+Q
Subjt:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

A0A6J1EVV9 uncharacterized protein LOC1114364632.7e-2467.37Show/hide
Query:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ
        E KE +R+R +P+YFQ+D AQKLQ L+QG KSVEDYYKEMD LMDR +L+ED+E LM    N +N EIADK DLQPY NI+E+LHIAIKIE+Q+Q
Subjt:  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCACCCCTACACGGGAGTATGCTCAAGTTGATCGAAACTTGGGAGATATCAAATTGAAGCTCAAAATTCTATGTGAAGAAAAGAAGGAGTTGTTGAGGAGGCGAGT
TCTTCCTAGATATTTCCAAAAGGACACAGCGCAAAAGCTACAAGTTTTGAGACAAGGTAGCAAGTCTGTGGAGGACTATTACAAGGAGATGGATTTGTTGATGGATCGAT
TTGATCTTGAAGAGGACCTGGAGAATCTCATGAATGACGTAAACAAGGAGATTGCTGATAAGGTTGATCTACAACCTTACTTTAACATTAAAGAGATGTTGCATATTGCC
ATAAAGATCGAAAAGCAACTCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCACCCCTACACGGGAGTATGCTCAAGTTGATCGAAACTTGGGAGATATCAAATTGAAGCTCAAAATTCTATGTGAAGAAAAGAAGGAGTTGTTGAGGAGGCGAGT
TCTTCCTAGATATTTCCAAAAGGACACAGCGCAAAAGCTACAAGTTTTGAGACAAGGTAGCAAGTCTGTGGAGGACTATTACAAGGAGATGGATTTGTTGATGGATCGAT
TTGATCTTGAAGAGGACCTGGAGAATCTCATGAATGACGTAAACAAGGAGATTGCTGATAAGGTTGATCTACAACCTTACTTTAACATTAAAGAGATGTTGCATATTGCC
ATAAAGATCGAAAAGCAACTCCAATGA
Protein sequenceShow/hide protein sequence
MLTPTREYAQVDRNLGDIKLKLKILCEEKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLMNDVNKEIADKVDLQPYFNIKEMLHIA
IKIEKQLQ