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Moc05g26430 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g26430
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr5:18894201..18894581
RNA-Seq ExpressionMoc05g26430
SyntenyMoc05g26430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7544005.1 Zinc finger CCHC-type [Arabidopsis thaliana x Arabidopsis arenosa]2.4e-0946.24Show/hide
Query:  LSFFK---VVSGFSVTLP-DQCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL
        L FF     VSG +V+LP D  + +   G +QL+S+LV+HDVL VPSF+FNL+SVS+L+K + L   F  + C IQ+      IG+G L H L
Subjt:  LSFFK---VVSGFSVTLP-DQCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL

KAG7600358.1 Zinc finger CCHC-type [Arabidopsis suecica]2.4e-0946.24Show/hide
Query:  LSFFK---VVSGFSVTLP-DQCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL
        L FF     VSG +V+LP D  + +   G +QL+S+LV+HDVL VPSF+FNL+SVS+L+K + L   F  + C IQ+      IG+G L H L
Subjt:  LSFFK---VVSGFSVTLP-DQCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL

XP_022856063.1 uncharacterized protein LOC111377235, partial [Olea europaea var. sylvestris]1.3e-1046.51Show/hide
Query:  KVVSGFSVTLPD-QCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL
        K++    VTLP+ + + V F+G ++ ++ L++ DVL+VP+F+FNL+SVS+LIK+S++IV F +N C IQD    K IGKG    GL
Subjt:  KVVSGFSVTLPD-QCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL

XP_022867559.1 uncharacterized protein LOC111387248 [Olea europaea var. sylvestris]5.3e-0943.96Show/hide
Query:  VSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGLSGMVSAF
        +S    TLP++  ++V F G I++  +L+++DVL+VP F+FNLLSV++L + SSL + F+ + CLIQ   TLK IG+GN    L  + SA+
Subjt:  VSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGLSGMVSAF

XP_022871010.1 uncharacterized protein LOC111390234 [Olea europaea var. sylvestris]1.1e-0947.44Show/hide
Query:  VSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKG
        V   SVTLP+   + +++I +++L+   V+ DVLFVP F+FNL+SVS+L ++SSL +TF++++C+IQ   T+K IGKG
Subjt:  VSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKG

TrEMBL top hitse value%identityAlignment
A0A151RFL8 Retrotran_gag_3 domain-containing protein1.7e-0842.86Show/hide
Query:  MLSFFKVVSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL
        M + +  +   +V LP+   +KVE IG I+L   + +H+VL +P+FRFNLLS+ TLI E+       +NSC++QD  TL+KIG     HGL
Subjt:  MLSFFKVVSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL

A0A151RLC3 Uncharacterized protein1.7e-0842.86Show/hide
Query:  MLSFFKVVSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL
        M + +  +   +V LP+   +KVE IG I+L   + +H+VL +P+FRFNLLS+ TLI E+       +NSC++QD  TL+KIG     HGL
Subjt:  MLSFFKVVSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL

A0A151SUL7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-0842.86Show/hide
Query:  MLSFFKVVSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL
        M + +  +   +V LP+   +KVE IG I+L   + +H+VL +P+FRFNLLS+ TLI E+       +NSC++QD  TL+KIG     HGL
Subjt:  MLSFFKVVSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL

A0A151T1V6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-0842.86Show/hide
Query:  MLSFFKVVSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL
        M + +  +   +V LP+   +KVE IG I+L   + +H+VL +P+FRFNLLS+ TLI E+       +NSC++QD  TL+KIG     HGL
Subjt:  MLSFFKVVSGFSVTLPDQC-LKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL

A0A2Z6M8V9 Uncharacterized protein2.2e-0841.94Show/hide
Query:  LSFF---KVVSGFSVTLPD-QCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL
        LSFF   + +    V LP+   +  E +GDIQ+TSTL++H VL++P+F +NL+S+S ++ +    + F  + CLIQ K   K IG G L HGL
Subjt:  LSFF---KVVSGFSVTLPD-QCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCTTTTTTTAAGGTTGTTTCTGGATTTTCTGTGACATTGCCAGATCAATGTCTTAAAGTGGAATTTATTGGGGATATTCAATTAACTTCCACCTTGGTTATTCA
TGATGTATTATTTGTGCCAAGCTTTCGATTCAATTTGTTATCCGTCAGCACTTTAATCAAGGAGTCTTCGCTTATAGTTACCTTTGTTTCTAATTCTTGTCTTATTCAGG
ACAAGTCCACTTTGAAGAAGATTGGCAAGGGTAATCTCTGGCATGGTCTCTCTGGCATGGTCTCTGCATTCTTGACATGGCTCGTTCATCCCCTATTGCTCCTCGTAATG
TTTGAAATGTTGTTTGTTTGTCCTTTGTTACTAATTGGCATGCTAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCTTTTTTTAAGGTTGTTTCTGGATTTTCTGTGACATTGCCAGATCAATGTCTTAAAGTGGAATTTATTGGGGATATTCAATTAACTTCCACCTTGGTTATTCA
TGATGTATTATTTGTGCCAAGCTTTCGATTCAATTTGTTATCCGTCAGCACTTTAATCAAGGAGTCTTCGCTTATAGTTACCTTTGTTTCTAATTCTTGTCTTATTCAGG
ACAAGTCCACTTTGAAGAAGATTGGCAAGGGTAATCTCTGGCATGGTCTCTCTGGCATGGTCTCTGCATTCTTGACATGGCTCGTTCATCCCCTATTGCTCCTCGTAATG
TTTGAAATGTTGTTTGTTTGTCCTTTGTTACTAATTGGCATGCTAGGCTAG
Protein sequenceShow/hide protein sequence
MLSFFKVVSGFSVTLPDQCLKVEFIGDIQLTSTLVIHDVLFVPSFRFNLLSVSTLIKESSLIVTFVSNSCLIQDKSTLKKIGKGNLWHGLSGMVSAFLTWLVHPLLLLVM
FEMLFVCPLLLIGMLG