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Moc05g26440 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g26440
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr5:18894710..18895015
RNA-Seq ExpressionMoc05g26440
SyntenyMoc05g26440
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141216.1 uncharacterized protein LOC111011669 [Momordica charantia]1.7e-1046.67Show/hide
Query:  MARSSASRSSS-SNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTT--SGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLH
        +AR+SAS +++ ++SQ ++KER  CTHC L GH VDRCYKL GYP G+ +T  S  + S SP+  T  ++  SS  SS   DSL+   A+Q QGLL+ L 
Subjt:  MARSSASRSSS-SNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTT--SGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLH

Query:  APVQS
        + + S
Subjt:  APVQS

XP_022148562.1 uncharacterized protein LOC111017196 [Momordica charantia]6.0e-1143.43Show/hide
Query:  MARSSASRSSSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL-SKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHA
        ++ SS S + S ++QGK+KE+ +CTHC L  H VDRCYKL GYP GY  ++ R    SP  +K+ + +S++++    +PDSL+ +NA+QC GL ++L +
Subjt:  MARSSASRSSSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL-SKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHA

XP_022150305.1 uncharacterized protein LOC111018505 [Momordica charantia]4.0e-1553.4Show/hide
Query:  MARSSASRS-----SSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSL
        MAR+S+S       S+S+S  KKK++  CTHCGL GH VDRCYKL GYP GY T+  RN SS   S T ++    SS SS +PDSL  L+ +QCQGLL L
Subjt:  MARSSASRS-----SSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSL

Query:  LHA
        L +
Subjt:  LHA

XP_022154919.1 uncharacterized protein LOC111022065 [Momordica charantia]2.1e-0845Show/hide
Query:  ARSSASR--SSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL-SKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLLHA
        + SS SR  SSS++   +K + LCTHCG++GH VD+CYKL  YP GY ++  +  SS+   S++    S+S S+  S + +SLA L A+QCQ LL+LL +
Subjt:  ARSSASR--SSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL-SKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLLHA

XP_022158788.1 uncharacterized protein LOC111025254 [Momordica charantia]2.5e-0946.88Show/hide
Query:  ARSSASRSSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGR-NFSSSPLSKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLL
        +RS  S +SS +   KK + +CTHCG+ GH  D+CY+L GYP G+     + +FS+S  S++ + S +S SS+SS   DSLA   A+QCQGLL+LL
Subjt:  ARSSASRSSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGR-NFSSSPLSKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLL

TrEMBL top hitse value%identityAlignment
A0A6J1CIG1 uncharacterized protein LOC1110116698.4e-1146.67Show/hide
Query:  MARSSASRSSS-SNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTT--SGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLH
        +AR+SAS +++ ++SQ ++KER  CTHC L GH VDRCYKL GYP G+ +T  S  + S SP+  T  ++  SS  SS   DSL+   A+Q QGLL+ L 
Subjt:  MARSSASRSSS-SNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTT--SGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLH

Query:  APVQS
        + + S
Subjt:  APVQS

A0A6J1D5E3 uncharacterized protein LOC1110171962.9e-1143.43Show/hide
Query:  MARSSASRSSSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL-SKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHA
        ++ SS S + S ++QGK+KE+ +CTHC L  H VDRCYKL GYP GY  ++ R    SP  +K+ + +S++++    +PDSL+ +NA+QC GL ++L +
Subjt:  MARSSASRSSSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL-SKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHA

A0A6J1D849 uncharacterized protein LOC1110185051.9e-1553.4Show/hide
Query:  MARSSASRS-----SSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSL
        MAR+S+S       S+S+S  KKK++  CTHCGL GH VDRCYKL GYP GY T+  RN SS   S T ++    SS SS +PDSL  L+ +QCQGLL L
Subjt:  MARSSASRS-----SSSNSQGKKKER-LCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSL

Query:  LHA
        L +
Subjt:  LHA

A0A6J1DNP7 uncharacterized protein LOC1110220651.0e-0845Show/hide
Query:  ARSSASR--SSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL-SKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLLHA
        + SS SR  SSS++   +K + LCTHCG++GH VD+CYKL  YP GY ++  +  SS+   S++    S+S S+  S + +SLA L A+QCQ LL+LL +
Subjt:  ARSSASR--SSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPL-SKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLLHA

A0A6J1DX32 uncharacterized protein LOC1110252541.2e-0946.88Show/hide
Query:  ARSSASRSSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGR-NFSSSPLSKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLL
        +RS  S +SS +   KK + +CTHCG+ GH  D+CY+L GYP G+     + +FS+S  S++ + S +S SS+SS   DSLA   A+QCQGLL+LL
Subjt:  ARSSASRSSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGR-NFSSSPLSKTINTSSES-SSVSSPVPDSLAGLNAEQCQGLLSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGTTCTTCTGCTTCTCGTTCTTCTTCTTCCAACTCTCAGGGAAAGAAGAAAGAACGTCTTTGCACTCATTGTGGACTTCATGGCCACATAGTGGATCGTTGTTA
CAAACTTCGTGGATATCCACTTGGCTATCTAACTACCAGCGGTCGCAATTTCTCCTCATCGCCTCTTTCCAAAACGATCAATACTTCTTCGGAGTCTTCGTCTGTTTCTT
CACCTGTTCCTGATTCTTTGGCTGGTCTTAATGCTGAACAGTGCCAAGGCCTATTAAGTCTGCTACACGCACCAGTCCAAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACGTTCTTCTGCTTCTCGTTCTTCTTCTTCCAACTCTCAGGGAAAGAAGAAAGAACGTCTTTGCACTCATTGTGGACTTCATGGCCACATAGTGGATCGTTGTTA
CAAACTTCGTGGATATCCACTTGGCTATCTAACTACCAGCGGTCGCAATTTCTCCTCATCGCCTCTTTCCAAAACGATCAATACTTCTTCGGAGTCTTCGTCTGTTTCTT
CACCTGTTCCTGATTCTTTGGCTGGTCTTAATGCTGAACAGTGCCAAGGCCTATTAAGTCTGCTACACGCACCAGTCCAAAGCTAA
Protein sequenceShow/hide protein sequence
MARSSASRSSSSNSQGKKKERLCTHCGLHGHIVDRCYKLRGYPLGYLTTSGRNFSSSPLSKTINTSSESSSVSSPVPDSLAGLNAEQCQGLLSLLHAPVQS