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Moc05g26540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g26540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr5:19017365..19019455
RNA-Seq ExpressionMoc05g26540
SyntenyMoc05g26540
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]1.9e-2537.18Show/hide
Query:  HQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAINDE----------TELPEEPHLEHIAPMDELKLVPLLNLEN---------------------
        HQAL+Y TPNGVGI+RGE + SREC  +ALKGL+VCA+ ++           +LP+    E  A  +EL+LVPLL+ E                      
Subjt:  HQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAINDE----------TELPEEPHLEHIAPMDELKLVPLLNLEN---------------------

Query:  -------------------------------------------------------------------------KSHLDQFKTYEVSQILRSENSNADALA
                                                                                 +SHL Q KTYEV+Q+ RSENSNADALA
Subjt:  -------------------------------------------------------------------------KSHLDQFKTYEVSQILRSENSNADALA

Query:  KLASVYETDLSKSVPVEILDTPSILESDMMEIDT
        KLAS YETDL++SVPVEILD PSILE D+ME+DT
Subjt:  KLASVYETDLSKSVPVEILDTPSILESDMMEIDT

XP_022150100.1 uncharacterized protein LOC111018362 [Momordica charantia]1.2e-1680.33Show/hide
Query:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT
        +SHL QF+TYEVSQ+ RSENSNADALAKLAS YETDL++SVPVEILD+PSILE D+ME+DT
Subjt:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT

XP_022153142.1 uncharacterized protein LOC111020710 [Momordica charantia]1.2e-1681.97Show/hide
Query:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT
        +SHL QF TYEVSQ+ RSENSNADALAKLAS YETDL++SVPVEILDTPSILE D+ME+DT
Subjt:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT

XP_022156778.1 uncharacterized protein LOC111023609 [Momordica charantia]2.5e-1781.97Show/hide
Query:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT
        +SHLDQFKTYEVSQ+ RSENSNADALAKLAS YETDL++S PVEILD+PSILE D+ME+DT
Subjt:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT

XP_022158219.1 protein NYNRIN-like [Momordica charantia]6.4e-2950.6Show/hide
Query:  HQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAI------NDETELPEE-PHLEHIAPMDELKLVPLLNLEN------------------------
        HQ L+Y TPNGVG +RGE   SREC  +ALKG +VCA+      N+  E   + P  E  AP +EL+LVPLL+LE                         
Subjt:  HQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAI------NDETELPEE-PHLEHIAPMDELKLVPLLNLEN------------------------

Query:  -------KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEI
               +S+L QF TYEVS+I R+ENSNADALAKLAS YETDL++SVPVEILD PSI E D+MEI
Subjt:  -------KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEI

TrEMBL top hitse value%identityAlignment
A0A6J1D6M1 Ribonuclease H9.3e-2637.18Show/hide
Query:  HQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAINDE----------TELPEEPHLEHIAPMDELKLVPLLNLEN---------------------
        HQAL+Y TPNGVGI+RGE + SREC  +ALKGL+VCA+ ++           +LP+    E  A  +EL+LVPLL+ E                      
Subjt:  HQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAINDE----------TELPEEPHLEHIAPMDELKLVPLLNLEN---------------------

Query:  -------------------------------------------------------------------------KSHLDQFKTYEVSQILRSENSNADALA
                                                                                 +SHL Q KTYEV+Q+ RSENSNADALA
Subjt:  -------------------------------------------------------------------------KSHLDQFKTYEVSQILRSENSNADALA

Query:  KLASVYETDLSKSVPVEILDTPSILESDMMEIDT
        KLAS YETDL++SVPVEILD PSILE D+ME+DT
Subjt:  KLASVYETDLSKSVPVEILDTPSILESDMMEIDT

A0A6J1D7J6 Ribonuclease H6.0e-1780.33Show/hide
Query:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT
        +SHL QF+TYEVSQ+ RSENSNADALAKLAS YETDL++SVPVEILD+PSILE D+ME+DT
Subjt:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT

A0A6J1DI47 Ribonuclease H6.0e-1781.97Show/hide
Query:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT
        +SHL QF TYEVSQ+ RSENSNADALAKLAS YETDL++SVPVEILDTPSILE D+ME+DT
Subjt:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT

A0A6J1DRK0 Ribonuclease H1.2e-1781.97Show/hide
Query:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT
        +SHLDQFKTYEVSQ+ RSENSNADALAKLAS YETDL++S PVEILD+PSILE D+ME+DT
Subjt:  KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEIDT

A0A6J1DYS0 Ribonuclease H3.1e-2950.6Show/hide
Query:  HQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAI------NDETELPEE-PHLEHIAPMDELKLVPLLNLEN------------------------
        HQ L+Y TPNGVG +RGE   SREC  +ALKG +VCA+      N+  E   + P  E  AP +EL+LVPLL+LE                         
Subjt:  HQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAI------NDETELPEE-PHLEHIAPMDELKLVPLLNLEN------------------------

Query:  -------KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEI
               +S+L QF TYEVS+I R+ENSNADALAKLAS YETDL++SVPVEILD PSI E D+MEI
Subjt:  -------KSHLDQFKTYEVSQILRSENSNADALAKLASVYETDLSKSVPVEILDTPSILESDMMEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACCAAGCCCTAGAATATCCAACTCCTAACGGGGTTGGCATCATCCGAGGTGAGCATAAAACTTCTAGGGAGTGCTCTGTTGCAGCACTCAAAGGGTTG
GCAGTATGTGCCATAAATGATGAGACAGAATTGCCTGAGGAGCCTCACCTTGAACACATTGCACCGATGGATGAACTCAAGCTTGTTCCTCTACTTAATCTTGAA
AATAAATCACACCTTGACCAGTTTAAGACTTACGAAGTCAGTCAAATTCTGAGATCAGAGAACTCCAACGCAGACGCTTTAGCCAAGTTGGCATCCGTTTACGAG
ACCGATCTGTCCAAATCAGTCCCAGTGGAAATACTCGACACTCCATCAATCTTAGAATCAGACATGATGGAGATTGATACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCACCAAGCCCTAGAATATCCAACTCCTAACGGGGTTGGCATCATCCGAGGTGAGCATAAAACTTCTAGGGAGTGCTCTGTTGCAGCACTCAAAGGGTTG
GCAGTATGTGCCATAAATGATGAGACAGAATTGCCTGAGGAGCCTCACCTTGAACACATTGCACCGATGGATGAACTCAAGCTTGTTCCTCTACTTAATCTTGAA
AATAAATCACACCTTGACCAGTTTAAGACTTACGAAGTCAGTCAAATTCTGAGATCAGAGAACTCCAACGCAGACGCTTTAGCCAAGTTGGCATCCGTTTACGAG
ACCGATCTGTCCAAATCAGTCCCAGTGGAAATACTCGACACTCCATCAATCTTAGAATCAGACATGATGGAGATTGATACCTAG
Protein sequenceShow/hide protein sequence
MAHQALEYPTPNGVGIIRGEHKTSRECSVAALKGLAVCAINDETELPEEPHLEHIAPMDELKLVPLLNLENKSHLDQFKTYEVSQILRSENSNADALAKLASVYE
TDLSKSVPVEILDTPSILESDMMEIDT