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Moc05g26690 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc05g26690
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationchr5:19204088..19204528
RNA-Seq ExpressionMoc05g26690
SyntenyMoc05g26690
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]2.8e-2555.63Show/hide
Query:  MDRNLIVSEM----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+       KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEM----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
        L         +DDF  S +ES E++L R+ +MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]4.0e-2455.56Show/hide
Query:  MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEE
        MDR+L+VSE    M+   K TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+
Subjt:  MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEE

Query:  ASLDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
          L         +DDFL S YES E++L R+ +MENF   S S+
Subjt:  ASLDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]5.7e-71100Show/hide
Query:  MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
        MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
Subjt:  MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM

Query:  EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLVIGALM
        EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLVIGALM
Subjt:  EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLVIGALM

XP_022941301.1 uncharacterized protein LOC111446639 [Cucurbita moschata]1.2e-1752.38Show/hide
Query:  MDRNLIVSEMEPMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT
        M+ +L+  ++E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS+   E N+ K ++ DDDE+  L  A 
Subjt:  MDRNLIVSEMEPMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT

Query:  TMEDSNDDFLESPYESFEEMLMREML
         MEDS+D FL   YES E + MR+M+
Subjt:  TMEDSNDDFLESPYESFEEMLMREML

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]7.3e-1850.39Show/hide
Query:  MDRNLIVSEMEPMKKE-TRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDV--
        M+ +L+  ++E  +KE  RKRK   +KNQPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA +FP       AS++  E N+ K ++ DDD++  L +  
Subjt:  MDRNLIVSEMEPMKKE-TRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDV--

Query:  -ATTMEDSNDDFLESPYESFEEMLMREML
         A  MEDS+DDFL   YES E + MR+M+
Subjt:  -ATTMEDSNDDFLESPYESFEEMLMREML

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein1.9e-2455.56Show/hide
Query:  MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEE
        MDR+L+VSE    M+   K TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+
Subjt:  MDRNLIVSE----MEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEE

Query:  ASLDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
          L         +DDFL S YES E++L R+ +MENF   S S+
Subjt:  ASLDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

A0A1S3B8H6 uncharacterized protein LOC1034871671.3e-2555.63Show/hide
Query:  MDRNLIVSEM----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+       KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEM----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
        L         +DDF  S +ES E++L R+ +MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

A0A5D3DPQ4 Sigma factor binding protein 21.3e-2555.63Show/hide
Query:  MDRNLIVSEM----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS
        MDR L+VSE+       KK TRKRK   +  QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK     +G+DDE+  
Subjt:  MDRNLIVSEM----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKN---REGDDDEEAS

Query:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV
        L         +DDF  S +ES E++L R+ +MENF   S S+
Subjt:  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like2.8e-71100Show/hide
Query:  MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
        MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM
Subjt:  MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTM

Query:  EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLVIGALM
        EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLVIGALM
Subjt:  EDSNDDFLESPYESFEEMLMREMLMENFAVPSRSVESSGLVIGALM

A0A6J1FKR4 uncharacterized protein LOC1114466396.0e-1852.38Show/hide
Query:  MDRNLIVSEMEPMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT
        M+ +L+  ++E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS+   E N+ K ++ DDDE+  L  A 
Subjt:  MDRNLIVSEMEPMKKETRK-RKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDA-EFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVAT

Query:  TMEDSNDDFLESPYESFEEMLMREML
         MEDS+D FL   YES E + MR+M+
Subjt:  TMEDSNDDFLESPYESFEEMLMREML

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.2e-0743.04Show/hide
Query:  SEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE
        S   P +   ++++ S   ++P+KV YISNPMRV T  S+FR LVQELTG+DA    P+     ++D+      EMNLE
Subjt:  SEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.9e-0850.82Show/hide
Query:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID
        +K  +++K +   N+P+KV YISNPMRV T AS+FR LVQELTG+DA    P   +  S D
Subjt:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein8.6e-0943.04Show/hide
Query:  SEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE
        S   P +   ++++ S   ++P+KV YISNPMRV T  S+FR LVQELTG+DA    P+     ++D+      EMNLE
Subjt:  SEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDV-----GEMNLE

AT3G56710.1 sigma factor binding protein 11.3e-0950.82Show/hide
Query:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID
        +K  +++K +   N+P+KV YISNPMRV T AS+FR LVQELTG+DA    P   +  S D
Subjt:  KKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGAAATCTAATTGTGAGCGAGATGGAGCCGATGAAGAAAGAAACTCGAAAACGAAAATTGTCTGTTCAGAAGAACCAACCCTTAAAAGTTGTCTACATATCGAA
CCCTATGAGGGTCCACACTAGCGCGTCTGAATTTAGAGCCCTGGTCCAAGAACTCACTGGTCGAGATGCCGAGTTCCCTGACCCGGCTAAGTTTCATCAGGCCTCGATTG
ATGTTGGGGAAATGAATCTCGAGAAGAATCGGGAAGGTGATGATGATGAGGAAGCGTCCCTTGATGTGGCCACTACAATGGAGGATTCGAATGACGACTTTCTTGAGAGT
CCATACGAGAGTTTTGAAGAGATGTTGATGAGGGAGATGCTGATGGAGAACTTTGCAGTCCCTTCTAGATCTGTTGAATCTTCTGGTTTAGTCATTGGAGCTTTGATGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGGATCGAAATCTAATTGTGAGCGAGATGGAGCCGATGAAGAAAGAAACTCGAAAACGAAAATTGTCTGTTCAGAAGAACCAACCCTTAAAAGTTGTCTACATATCGAA
CCCTATGAGGGTCCACACTAGCGCGTCTGAATTTAGAGCCCTGGTCCAAGAACTCACTGGTCGAGATGCCGAGTTCCCTGACCCGGCTAAGTTTCATCAGGCCTCGATTG
ATGTTGGGGAAATGAATCTCGAGAAGAATCGGGAAGGTGATGATGATGAGGAAGCGTCCCTTGATGTGGCCACTACAATGGAGGATTCGAATGACGACTTTCTTGAGAGT
CCATACGAGAGTTTTGAAGAGATGTTGATGAGGGAGATGCTGATGGAGAACTTTGCAGTCCCTTCTAGATCTGTTGAATCTTCTGGTTTAGTCATTGGAGCTTTGATGTG
A
Protein sequenceShow/hide protein sequence
MDRNLIVSEMEPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPAKFHQASIDVGEMNLEKNREGDDDEEASLDVATTMEDSNDDFLES
PYESFEEMLMREMLMENFAVPSRSVESSGLVIGALM